Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC104465.1-201ENST00000611365 139 ntBASIC0.77□□□□□ -2.29
HDDC3Q8N4P3 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 RNU6-1084P-201ENST00000362498 107 ntBASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.115-201ENST00000363272 98 ntBASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 SNORA69.1-201ENST00000390904 137 ntBASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 RPS26P5-201ENST00000418544 335 ntBASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 MRPS18CP6-201ENST00000423587 223 ntBASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 MTND4P28-201ENST00000426217 387 ntBASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 AC116353.2-201ENST00000505332 712 ntBASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 SNORA74.3-201ENST00000517108 154 ntBASIC0.76□□□□□ -2.29
HDDC3Q8N4P3 AC023934.1-201ENST00000574529 2389 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.251-201ENST00000364551 99 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.339-201ENST00000365325 102 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.361-201ENST00000365515 120 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 MIR146A-201ENST00000385201 99 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 AL031003.1-201ENST00000404229 172 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 AC022616.4-201ENST00000522985 181 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 MIR4762-201ENST00000585261 75 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 AL353765.1-201ENST00000605514 183 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 SEPT14P17-201ENST00000617978 177 ntBASIC0.75□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.6-201ENST00000362350 114 ntBASIC0.74□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.72-201ENST00000362894 103 ntBASIC0.74□□□□□ -2.29
HDDC3Q8N4P3 SNORA25.3-201ENST00000363205 127 ntBASIC0.74□□□□□ -2.29
HDDC3Q8N4P3 RNU6-324P-201ENST00000363957 106 ntBASIC0.74□□□□□ -2.29
HDDC3Q8N4P3 RNU6-1297P-201ENST00000384415 104 ntBASIC0.74□□□□□ -2.29
HDDC3Q8N4P3 SNORA18.7-201ENST00000516910 131 ntBASIC0.74□□□□□ -2.29
HDDC3Q8N4P3 RNU6-264P-201ENST00000517134 104 ntBASIC0.74□□□□□ -2.29
HDDC3Q8N4P3 AC131055.1-201ENST00000584626 316 ntBASIC0.74□□□□□ -2.29
HDDC3Q8N4P3 RNA5SP347-201ENST00000362445 119 ntBASIC0.73□□□□□ -2.29
HDDC3Q8N4P3 RNU6-961P-201ENST00000363893 105 ntBASIC0.73□□□□□ -2.29
HDDC3Q8N4P3 RNA5SP48-201ENST00000363969 126 ntBASIC0.73□□□□□ -2.29
HDDC3Q8N4P3 SNORD116-4-201ENST00000384733 96 ntBASIC0.73□□□□□ -2.29
HDDC3Q8N4P3 FCF1P4-201ENST00000448326 183 ntBASIC0.73□□□□□ -2.29
HDDC3Q8N4P3 AC067940.1-201ENST00000458411 300 ntBASIC0.73□□□□□ -2.29
HDDC3Q8N4P3 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.73□□□□□ -2.29
HDDC3Q8N4P3 AL669831.3-213ENST00000636676 183 ntBASIC0.73□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.85-201ENST00000363014 111 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.253-201ENST00000364562 112 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 snoU2-30.1-201ENST00000365012 70 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 Y_RNA.577-201ENST00000384794 101 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 AL035398.1-201ENST00000430869 322 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 MTND1P34-201ENST00000438556 671 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 HMGN2P32-201ENST00000444648 269 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 RNU7-41P-201ENST00000515917 61 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 SNORD45.4-201ENST00000516629 73 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 AC109810.1-201ENST00000534066 224 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 MIR4764-201ENST00000580680 88 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 AC060780.3-201ENST00000589464 80 ntBASIC0.72□□□□□ -2.29
HDDC3Q8N4P3 RNU6-110P-201ENST00000384508 104 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 SNORD89-201ENST00000390981 114 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 Y_RNA.592-201ENST00000410274 109 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 RNU2-54P-201ENST00000410299 190 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 AL390729.2-201ENST00000416137 156 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 CHEK2P4-201ENST00000450340 246 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 U8.19-201ENST00000459095 133 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 AC117454.1-201ENST00000491120 168 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 RNU7-43P-201ENST00000516554 64 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 RNU7-30P-201ENST00000516835 62 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 Y_RNA.714-201ENST00000517065 90 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 RNU6-1213P-201ENST00000517075 94 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 AC055872.1-201ENST00000570978 278 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 AC025627.3-201ENST00000582078 182 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 AC005176.2-201ENST00000596933 147 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 7SK.10-201ENST00000621414 298 ntBASIC0.71□□□□□ -2.3
HDDC3Q8N4P3 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 HSBP1P2-201ENST00000299671 229 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 AC117470.1-201ENST00000381974 330 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 MIR522-201ENST00000385071 87 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 RNU6-131P-201ENST00000391144 107 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 RNU6-1156P-201ENST00000410365 100 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 RNU6-994P-201ENST00000410507 111 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 U7.7-201ENST00000459276 60 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 AC011352.1-201ENST00000512300 793 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 RNU6-155P-201ENST00000516347 100 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 RNU7-4P-201ENST00000516961 62 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 RNA5SP330-201ENST00000517096 96 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 AC093027.1-201ENST00000546698 429 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 AC106800.4-201ENST00000614905 153 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 AC073869.6-201ENST00000640656 341 ntBASIC0.7□□□□□ -2.3
HDDC3Q8N4P3 Y_RNA.101-201ENST00000363154 102 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 Y_RNA.178-201ENST00000363832 102 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 MIR1185-1-201ENST00000408598 86 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 COX6CP6-201ENST00000490840 228 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 AC113410.1-201ENST00000505029 247 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 PRDX4P1-201ENST00000507189 574 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 AC144568.1-201ENST00000520139 137 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 AC004812.1-201ENST00000540773 146 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 MIR8087-201ENST00000612745 78 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 AC240442.1-201ENST00000616055 283 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 AC087588.2-201ENST00000617667 426 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 AC243829.3-201ENST00000622177 108 ntBASIC0.69□□□□□ -2.3
HDDC3Q8N4P3 AL589743.1-201ENST00000551932 2712 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 135.3 ms