Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC009229.3-201ENST00000608056 282 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 AC243994.1-201ENST00000618627 109 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.34□□□□□ -2.36
FOXF1Q12946 Y_RNA.172-201ENST00000363765 102 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 Y_RNA.453-201ENST00000384223 109 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 RNU6-601P-201ENST00000384540 107 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AL031003.1-201ENST00000404229 172 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 MTND4P28-201ENST00000426217 387 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AL589823.1-201ENST00000429577 183 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.33□□□□□ -2.36
FOXF1Q12946 RPS20P10-201ENST00000451209 253 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AC107399.1-201ENST00000451226 265 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AC011352.1-201ENST00000512300 793 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 RNU7-41P-201ENST00000515917 61 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 RNU6-120P-201ENST00000516077 103 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.33□□□□□ -2.36
FOXF1Q12946 AC023827.1-201ENST00000569247 97 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AC055872.1-201ENST00000570978 278 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AC087685.1-201ENST00000587507 141 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AC243829.6-201ENST00000612652 106 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AC004467.1-201ENST00000615678 330 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AC240442.1-201ENST00000616055 283 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 AC092794.2-201ENST00000620933 563 ntBASIC0.33□□□□□ -2.36
FOXF1Q12946 Y_RNA.72-201ENST00000362894 103 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 snoU2-30.1-201ENST00000365012 70 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 Y_RNA.330-201ENST00000365230 109 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 SNORA72-201ENST00000384339 132 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 Y_RNA.577-201ENST00000384794 101 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 MIR548F5-201ENST00000408421 86 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 MIR1277-201ENST00000408536 78 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 SNORD99-201ENST00000408612 74 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 AC016907.1-201ENST00000419483 435 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 AL353997.1-201ENST00000432936 108 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 CHEK2P4-201ENST00000450340 246 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 RPL30P15-201ENST00000457129 321 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 AC093534.1-201ENST00000504977 132 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 RNU6-966P-201ENST00000516479 104 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 AC036111.3-201ENST00000526389 112 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.32□□□□□ -2.36
FOXF1Q12946 AC060780.3-201ENST00000589464 80 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 Z83818.1-201ENST00000603584 150 ntBASIC0.32□□□□□ -2.36
FOXF1Q12946 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.32□□□□□ -2.36
FOXF1Q12946 Y_RNA.3-201ENST00000362331 103 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 Y_RNA.88-201ENST00000363029 99 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 Y_RNA.796-201ENST00000364268 102 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 SNORD113.3-201ENST00000364630 78 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 Y_RNA.799-201ENST00000364992 102 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 RNY1P8-201ENST00000383970 114 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 RNY3P4-201ENST00000384428 101 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 MIR1827-201ENST00000408549 66 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 AL390729.2-201ENST00000416137 156 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 AC092423.1-201ENST00000430165 186 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 FCF1P4-201ENST00000448326 183 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 AC067940.1-201ENST00000458411 300 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 SNORD123-201ENST00000459473 70 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 RNU6-408P-201ENST00000515910 100 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 SNORA25.10-201ENST00000515926 124 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 RN7SKP12-201ENST00000516275 143 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 RNU6-830P-201ENST00000516353 107 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 SNORD45.4-201ENST00000516629 73 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 Y_RNA.714-201ENST00000517065 90 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 AF235103.2-201ENST00000525753 346 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 AC005972.2-201ENST00000604690 348 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 AC002553.4-201ENST00000616896 331 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.31□□□□□ -2.36
FOXF1Q12946 AC007742.2-201ENST00000618226 398 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 AC091925.1-201ENST00000623204 462 ntBASIC0.31□□□□□ -2.36
FOXF1Q12946 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.31□□□□□ -2.36
FOXF1Q12946 RNY1-201ENST00000364228 113 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 Y_RNA.230-201ENST00000364348 109 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 Y_RNA.404-201ENST00000383978 102 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 Y_RNA.436-201ENST00000384097 102 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 SNORA50A-201ENST00000384225 134 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 Y_RNA.516-201ENST00000384541 124 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 MIR625-201ENST00000385047 85 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 MIR516B2-201ENST00000385190 85 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 MIR1302-7-201ENST00000408841 72 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 Y_RNA.592-201ENST00000410274 109 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 RNU6-613P-201ENST00000410412 108 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 MTCO2P27-201ENST00000420740 428 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 AC244098.3-201ENST00000424803 96 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 SNRPGP10-201ENST00000432323 225 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 MTATP6P26-201ENST00000445926 662 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 MTND3P10-201ENST00000450967 341 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 MIR2053-201ENST00000459295 91 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 PISRT1.1-201ENST00000616930 107 ntBASIC0.3□□□□□ -2.36
FOXF1Q12946 MIR377-201ENST00000362145 69 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 Y_RNA.86-201ENST00000363020 111 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 RNU6-961P-201ENST00000363893 105 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 VTRNA1-3-201ENST00000365645 89 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 RNU6-945P-201ENST00000383947 107 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 RNU6-1297P-201ENST00000384415 104 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 MIR598-201ENST00000384868 97 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 SNORA69.1-201ENST00000390904 137 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 RNU1-119P-201ENST00000391122 165 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 RNU6-131P-201ENST00000391144 107 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 SNORA75.4-201ENST00000391278 119 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 RNA5SP95-201ENST00000410319 137 ntBASIC0.29□□□□□ -2.36
FOXF1Q12946 Y_RNA.621-201ENST00000411065 96 ntBASIC0.29□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms