Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.77□□□□□ -2.29
MSH6P52701 MIR4653-201ENST00000585107 83 ntBASIC0.77□□□□□ -2.29
MSH6P52701 AC004832.4-201ENST00000608952 331 ntBASIC0.77□□□□□ -2.29
MSH6P52701 AC084782.3-201ENST00000612282 578 ntBASIC0.77□□□□□ -2.29
MSH6P52701 AC087588.2-201ENST00000617667 426 ntBASIC0.77□□□□□ -2.29
MSH6P52701 RNU6-961P-201ENST00000363893 105 ntBASIC0.76□□□□□ -2.29
MSH6P52701 SNORD115-30-201ENST00000364117 82 ntBASIC0.76□□□□□ -2.29
MSH6P52701 SNORD114-24-201ENST00000365029 72 ntBASIC0.76□□□□□ -2.29
MSH6P52701 RNU6-767P-201ENST00000384132 107 ntBASIC0.76□□□□□ -2.29
MSH6P52701 Y_RNA.577-201ENST00000384794 101 ntBASIC0.76□□□□□ -2.29
MSH6P52701 AL354751.2-201ENST00000415471 210 ntBASIC0.76□□□□□ -2.29
MSH6P52701 MTND4P28-201ENST00000426217 387 ntBASIC0.76□□□□□ -2.29
MSH6P52701 MTND1P4-201ENST00000435196 415 ntBASIC0.76□□□□□ -2.29
MSH6P52701 AL162725.1-201ENST00000435405 301 ntBASIC0.76□□□□□ -2.29
MSH6P52701 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.76□□□□□ -2.29
MSH6P52701 SNORD124-201ENST00000459577 104 ntBASIC0.76□□□□□ -2.29
MSH6P52701 SNORA62.5-201ENST00000516634 120 ntBASIC0.76□□□□□ -2.29
MSH6P52701 AC004817.2-201ENST00000561794 651 ntBASIC0.76□□□□□ -2.29
MSH6P52701 AC068790.6-201ENST00000602558 258 ntBASIC0.76□□□□□ -2.29
MSH6P52701 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.76□□□□□ -2.29
MSH6P52701 RNU6-845P-201ENST00000362578 103 ntBASIC0.75□□□□□ -2.29
MSH6P52701 RNU6-969P-201ENST00000383900 105 ntBASIC0.75□□□□□ -2.29
MSH6P52701 RNU6-1156P-201ENST00000410365 100 ntBASIC0.75□□□□□ -2.29
MSH6P52701 RNU4-14P-201ENST00000410858 122 ntBASIC0.75□□□□□ -2.29
MSH6P52701 ELOCP24-201ENST00000456370 334 ntBASIC0.75□□□□□ -2.29
MSH6P52701 snoU13.25-201ENST00000458945 104 ntBASIC0.75□□□□□ -2.29
MSH6P52701 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.75□□□□□ -2.29
MSH6P52701 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.75□□□□□ -2.29
MSH6P52701 RNU6-1337P-201ENST00000516525 95 ntBASIC0.75□□□□□ -2.29
MSH6P52701 Y_RNA.691-201ENST00000516611 103 ntBASIC0.75□□□□□ -2.29
MSH6P52701 RNA5SP285-201ENST00000516619 119 ntBASIC0.75□□□□□ -2.29
MSH6P52701 AC023442.1-201ENST00000531247 422 ntBASIC0.75□□□□□ -2.29
MSH6P52701 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.75□□□□□ -2.29
MSH6P52701 AC055872.1-201ENST00000570978 278 ntBASIC0.75□□□□□ -2.29
MSH6P52701 AL096861.1-201ENST00000610899 123 ntBASIC0.75□□□□□ -2.29
MSH6P52701 AC106800.4-201ENST00000614905 153 ntBASIC0.75□□□□□ -2.29
MSH6P52701 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.75□□□□□ -2.29
MSH6P52701 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
MSH6P52701 MIR200A-201ENST00000384875 90 ntBASIC0.74□□□□□ -2.29
MSH6P52701 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.74□□□□□ -2.29
MSH6P52701 SNORA69.1-201ENST00000390904 137 ntBASIC0.74□□□□□ -2.29
MSH6P52701 RNU2-70P-201ENST00000410718 179 ntBASIC0.74□□□□□ -2.29
MSH6P52701 AL606490.4-201ENST00000423117 127 ntBASIC0.74□□□□□ -2.29
MSH6P52701 RNU7-21P-201ENST00000459430 62 ntBASIC0.74□□□□□ -2.29
MSH6P52701 CYCTP-201ENST00000504253 315 ntBASIC0.74□□□□□ -2.29
MSH6P52701 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.74□□□□□ -2.29
MSH6P52701 RNU6-1213P-201ENST00000517075 94 ntBASIC0.74□□□□□ -2.29
MSH6P52701 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.74□□□□□ -2.29
MSH6P52701 MIR4514-201ENST00000581410 57 ntBASIC0.74□□□□□ -2.29
MSH6P52701 MIR4762-201ENST00000585261 75 ntBASIC0.74□□□□□ -2.29
MSH6P52701 AL669831.3-213ENST00000636676 183 ntBASIC0.74□□□□□ -2.29
MSH6P52701 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
MSH6P52701 HSBP1P2-201ENST00000299671 229 ntBASIC0.73□□□□□ -2.29
MSH6P52701 Y_RNA.279-201ENST00000364763 95 ntBASIC0.73□□□□□ -2.29
MSH6P52701 Y_RNA.390-201ENST00000383932 102 ntBASIC0.73□□□□□ -2.29
MSH6P52701 RNU6-163P-201ENST00000384396 106 ntBASIC0.73□□□□□ -2.29
MSH6P52701 RNA5SP63-201ENST00000391225 112 ntBASIC0.73□□□□□ -2.29
MSH6P52701 Y_RNA.592-201ENST00000410274 109 ntBASIC0.73□□□□□ -2.29
MSH6P52701 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.73□□□□□ -2.29
MSH6P52701 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.73□□□□□ -2.29
MSH6P52701 RNU6-120P-201ENST00000516077 103 ntBASIC0.73□□□□□ -2.29
MSH6P52701 SNORA70.12-201ENST00000516084 153 ntBASIC0.73□□□□□ -2.29
MSH6P52701 MIR3192-201ENST00000584920 77 ntBASIC0.73□□□□□ -2.29
MSH6P52701 AC120024.3-201ENST00000603167 156 ntBASIC0.73□□□□□ -2.29
MSH6P52701 AC023932.2-201ENST00000603176 175 ntBASIC0.73□□□□□ -2.29
MSH6P52701 AL391903.3-201ENST00000612158 163 ntBASIC0.73□□□□□ -2.29
MSH6P52701 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
MSH6P52701 AL008636.1-201ENST00000625038 1018 ntBASIC0.73□□□□□ -2.29
MSH6P52701 Y_RNA.101-201ENST00000363154 102 ntBASIC0.72□□□□□ -2.29
MSH6P52701 Y_RNA.166-201ENST00000363730 102 ntBASIC0.72□□□□□ -2.29
MSH6P52701 Y_RNA.336-201ENST00000365307 109 ntBASIC0.72□□□□□ -2.29
MSH6P52701 PIGPP3-201ENST00000425307 415 ntBASIC0.72□□□□□ -2.29
MSH6P52701 AC245047.8-201ENST00000456455 284 ntBASIC0.72□□□□□ -2.29
MSH6P52701 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.72□□□□□ -2.29
MSH6P52701 AC114811.1-201ENST00000507207 168 ntBASIC0.72□□□□□ -2.29
MSH6P52701 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.72□□□□□ -2.29
MSH6P52701 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
MSH6P52701 AC240442.1-201ENST00000616055 283 ntBASIC0.72□□□□□ -2.29
MSH6P52701 AL591926.4-201ENST00000616895 298 ntBASIC0.72□□□□□ -2.29
MSH6P52701 AC098679.4-201ENST00000624241 654 ntBASIC0.72□□□□□ -2.29
MSH6P52701 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
MSH6P52701 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
MSH6P52701 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
MSH6P52701 SNORD68-201ENST00000363214 84 ntBASIC0.71□□□□□ -2.3
MSH6P52701 U8.5-201ENST00000364528 136 ntBASIC0.71□□□□□ -2.3
MSH6P52701 SNORA75.6-201ENST00000391318 127 ntBASIC0.71□□□□□ -2.3
MSH6P52701 MIR1298-201ENST00000408783 112 ntBASIC0.71□□□□□ -2.3
MSH6P52701 RNU2-54P-201ENST00000410299 190 ntBASIC0.71□□□□□ -2.3
MSH6P52701 Y_RNA.646-201ENST00000410980 101 ntBASIC0.71□□□□□ -2.3
MSH6P52701 RNU6-1199P-201ENST00000411249 104 ntBASIC0.71□□□□□ -2.3
MSH6P52701 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.71□□□□□ -2.3
MSH6P52701 RNU7-90P-201ENST00000459216 62 ntBASIC0.71□□□□□ -2.3
MSH6P52701 SNORA25.10-201ENST00000515926 124 ntBASIC0.71□□□□□ -2.3
MSH6P52701 ACA64.5-201ENST00000516207 127 ntBASIC0.71□□□□□ -2.3
MSH6P52701 RNU6-264P-201ENST00000517134 104 ntBASIC0.71□□□□□ -2.3
MSH6P52701 AC006380.1-201ENST00000603598 186 ntBASIC0.71□□□□□ -2.3
MSH6P52701 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.71□□□□□ -2.3
MSH6P52701 CASC19-280ENST00000642102 1351 ntBASIC0.71□□□□□ -2.3
MSH6P52701 RNU6-310P-201ENST00000384655 107 ntBASIC0.7□□□□□ -2.3
MSH6P52701 MIR92A1-201ENST00000385233 78 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms