Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC-1.78□□□□□ -2.69
CCDC88BA6NC98 AF186996.7-201ENST00000492781 209 ntBASIC-1.78□□□□□ -2.69
CCDC88BA6NC98 MIR6851-201ENST00000617060 67 ntBASIC-1.78□□□□□ -2.69
CCDC88BA6NC98 AC137590.2-201ENST00000619709 240 ntBASIC-1.78□□□□□ -2.69
CCDC88BA6NC98 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.79□□□□□ -2.7
CCDC88BA6NC98 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-1.79□□□□□ -2.7
CCDC88BA6NC98 HIF1AP1-201ENST00000553642 175 ntBASIC-1.79□□□□□ -2.7
CCDC88BA6NC98 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC-1.79□□□□□ -2.7
CCDC88BA6NC98 AC126544.2-201ENST00000625174 749 ntBASIC-1.79□□□□□ -2.7
CCDC88BA6NC98 MIR382-201ENST00000637119 76 ntBASIC-1.79□□□□□ -2.7
CCDC88BA6NC98 snoU2-30.1-201ENST00000365012 70 ntBASIC-1.8□□□□□ -2.7
CCDC88BA6NC98 RNU4-66P-201ENST00000365199 138 ntBASIC-1.8□□□□□ -2.7
CCDC88BA6NC98 MTND4LP7-201ENST00000431728 294 ntBASIC-1.8□□□□□ -2.7
CCDC88BA6NC98 AC114878.1-201ENST00000441166 358 ntBASIC-1.8□□□□□ -2.7
CCDC88BA6NC98 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC-1.8□□□□□ -2.7
CCDC88BA6NC98 RNU7-188P-201ENST00000517063 64 ntBASIC-1.8□□□□□ -2.7
CCDC88BA6NC98 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-1.8□□□□□ -2.7
CCDC88BA6NC98 MTND5P34-201ENST00000568888 325 ntBASIC-1.8□□□□□ -2.7
CCDC88BA6NC98 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.8□□□□□ -2.7
CCDC88BA6NC98 RNU6-431P-201ENST00000383874 107 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 RNU6-926P-201ENST00000384075 107 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 MIR9-2-201ENST00000384838 87 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 ZNF736P7Y-201ENST00000425158 820 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 MTND4LP14-201ENST00000429447 288 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 AC244505.6-201ENST00000452829 130 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 snoU13.2-201ENST00000459201 104 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 AC010587.1-201ENST00000505809 469 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 AC011352.1-201ENST00000512300 793 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 POLR3GP1-201ENST00000594073 261 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 MIR6082-201ENST00000613604 109 ntBASIC-1.81□□□□□ -2.7
CCDC88BA6NC98 SNORD50B-201ENST00000364995 70 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 RNU6-708P-201ENST00000384217 107 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 SNORD56B-201ENST00000384713 71 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 RNU6-291P-201ENST00000384720 107 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 MTCO2P27-201ENST00000420740 428 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 AL117351.1-201ENST00000438864 766 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 AC116353.2-201ENST00000505332 712 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 Y_RNA.697-201ENST00000516776 113 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 RNU7-181P-201ENST00000517234 74 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 RNU6-784P-201ENST00000384330 106 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 AL158050.1-201ENST00000416077 457 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 AC022137.1-201ENST00000483735 151 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 HSPE1P23-201ENST00000509838 286 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 MIR4423-201ENST00000580922 80 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 AC092574.1-201ENST00000609771 420 ntBASIC-1.82□□□□□ -2.7
CCDC88BA6NC98 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 SNORA20B-201ENST00000384220 132 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 SNORD38C-201ENST00000384381 69 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 MTCO2P11-201ENST00000431069 680 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 AC236972.2-201ENST00000434979 310 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 RNU7-51P-201ENST00000516560 62 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 snoU83B.1-201ENST00000517136 88 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 MIR3912-201ENST00000577566 105 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC-1.83□□□□□ -2.7
CCDC88BA6NC98 MT-TF-201ENST00000387314 71 ntBASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 RNU2-8P-201ENST00000410727 190 ntBASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 RNU6-847P-201ENST00000411115 108 ntBASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 AC108059.2-201ENST00000434626 151 ntBASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 FCF1P4-201ENST00000448326 183 ntBASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 RPL39P25-201ENST00000449384 154 ntBASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 RNU2-11P-201ENST00000459191 187 ntBASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 MIR5591-201ENST00000578248 65 ntBASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 MTND5P17-201ENST00000418405 1603 ntBASIC-1.84□□□□□ -2.7
CCDC88BA6NC98 MIR16-2-201ENST00000362117 81 ntBASIC-1.85□□□□□ -2.71
CCDC88BA6NC98 MIR30D-201ENST00000362283 70 ntBASIC-1.85□□□□□ -2.71
CCDC88BA6NC98 SNORD115-44-201ENST00000365391 82 ntBASIC-1.85□□□□□ -2.71
CCDC88BA6NC98 MIR522-201ENST00000385071 87 ntBASIC-1.85□□□□□ -2.71
CCDC88BA6NC98 MTND4P18-201ENST00000447010 465 ntBASIC-1.85□□□□□ -2.71
CCDC88BA6NC98 AP000533.3-201ENST00000447704 118 ntBASIC-1.85□□□□□ -2.71
CCDC88BA6NC98 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-1.85□□□□□ -2.71
CCDC88BA6NC98 uc_338.10-201ENST00000621872 182 ntBASIC-1.85□□□□□ -2.71
CCDC88BA6NC98 AC127459.3-201ENST00000624328 466 ntBASIC-1.85□□□□□ -2.71
CCDC88BA6NC98 RNU6-702P-201ENST00000364982 107 ntBASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 AL590623.1-201ENST00000427864 105 ntBASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 HMGN2P32-201ENST00000444648 269 ntBASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 RNU6-329P-201ENST00000459618 107 ntBASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 AC010655.3-201ENST00000478818 450 ntBASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 SNORD22.1-201ENST00000516331 125 ntBASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 MIR4770-201ENST00000579149 58 ntBASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 AC023510.2-201ENST00000622162 746 ntBASIC-1.86□□□□□ -2.71
CCDC88BA6NC98 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.87□□□□□ -2.71
CCDC88BA6NC98 RNA5SP245-201ENST00000364239 121 ntBASIC-1.87□□□□□ -2.71
CCDC88BA6NC98 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.87□□□□□ -2.71
CCDC88BA6NC98 SNORA24.1-201ENST00000384401 135 ntBASIC-1.87□□□□□ -2.71
CCDC88BA6NC98 MIR147A-201ENST00000385079 72 ntBASIC-1.87□□□□□ -2.71
CCDC88BA6NC98 AC018865.2-201ENST00000423631 129 ntBASIC-1.87□□□□□ -2.71
CCDC88BA6NC98 MTND1P32-201ENST00000433043 938 ntBASIC-1.87□□□□□ -2.71
CCDC88BA6NC98 AC068880.4-201ENST00000623082 495 ntBASIC-1.87□□□□□ -2.71
CCDC88BA6NC98 RNU6-1309P-201ENST00000363305 108 ntBASIC-1.88□□□□□ -2.71
CCDC88BA6NC98 RNU6-727P-201ENST00000363592 107 ntBASIC-1.88□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 132.7 ms