Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 SNORA8.3-201ENST00000384679 139 ntBASIC-0.15□□□□□ -2.43
SCN3AQ9NY46 MIR643-201ENST00000385267 97 ntBASIC-0.15□□□□□ -2.43
SCN3AQ9NY46 RNU6-1158P-201ENST00000391167 107 ntBASIC-0.15□□□□□ -2.43
SCN3AQ9NY46 SNORA75.6-201ENST00000391318 127 ntBASIC-0.15□□□□□ -2.43
SCN3AQ9NY46 AL354751.2-201ENST00000415471 210 ntBASIC-0.15□□□□□ -2.43
SCN3AQ9NY46 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.15□□□□□ -2.43
SCN3AQ9NY46 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-0.15□□□□□ -2.43
SCN3AQ9NY46 MIR3684-201ENST00000579779 74 ntBASIC-0.15□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.358-201ENST00000365491 99 ntBASIC-0.16□□□□□ -2.43
SCN3AQ9NY46 RNU6-205P-201ENST00000390858 107 ntBASIC-0.16□□□□□ -2.43
SCN3AQ9NY46 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC-0.16□□□□□ -2.43
SCN3AQ9NY46 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-0.16□□□□□ -2.43
SCN3AQ9NY46 RPL30P10-201ENST00000488148 337 ntBASIC-0.16□□□□□ -2.43
SCN3AQ9NY46 AC116353.2-201ENST00000505332 712 ntBASIC-0.16□□□□□ -2.43
SCN3AQ9NY46 FRG2DP-202ENST00000566967 323 ntBASIC-0.16□□□□□ -2.43
SCN3AQ9NY46 MIR6740-201ENST00000618268 113 ntBASIC-0.16□□□□□ -2.43
SCN3AQ9NY46 Y_RNA.1-201ENST00000352915 104 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 RNU6-302P-201ENST00000365249 107 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 RNU5A-6P-201ENST00000384136 116 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 SNORA8.2-201ENST00000384372 139 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 RNU6-679P-201ENST00000391003 106 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 SNORD100-201ENST00000408573 76 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 RNU6-602P-201ENST00000411155 105 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 MTCO1P29-201ENST00000496868 288 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 AC091885.1-201ENST00000506658 268 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 RNU6-1114P-201ENST00000516022 107 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 AC093023.1-201ENST00000547375 507 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 MIR548AO-201ENST00000579992 96 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 MIR3672-201ENST00000584290 82 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 AF250324.2-201ENST00000608299 610 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 AL158063.1-201ENST00000615349 536 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 MIR1295B-201ENST00000636144 60 ntBASIC-0.16□□□□□ -2.44
SCN3AQ9NY46 RNA5SP517-201ENST00000364724 117 ntBASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 MIR760-201ENST00000390220 80 ntBASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 RNU2-59P-201ENST00000410482 191 ntBASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 AL512326.2-201ENST00000426359 151 ntBASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 MTATP6P13-201ENST00000438531 667 ntBASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 ACA59.1-201ENST00000515966 143 ntBASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 AL118558.2-201ENST00000556294 238 ntBASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 MIR4743-201ENST00000584576 69 ntBASIC-0.17□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.253-201ENST00000364562 112 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 RNU6-1145P-201ENST00000384246 107 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 RNU6-790P-201ENST00000384479 105 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 AC010486.3-201ENST00000511602 785 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 SCARNA8-201ENST00000515924 131 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 RN7SKP12-201ENST00000516275 143 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 U6.115-201ENST00000636045 103 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 AC068137.3-201ENST00000639191 341 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.2-201ENST00000362330 96 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.169-201ENST00000363745 96 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.201-201ENST00000364052 96 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 SNORD114-15-201ENST00000364687 72 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.296-201ENST00000364930 108 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 RNU6-934P-201ENST00000365154 107 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 SNORD28B-201ENST00000390993 75 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 MIR892B-201ENST00000401279 77 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 PCMTD1P1-201ENST00000455560 355 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 snoU13.2-201ENST00000459201 104 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 AC108676.2-201ENST00000605225 163 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 AC005014.3-201ENST00000605985 190 ntBASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC-0.18□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 MIR570-201ENST00000384917 97 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 MIR548H2-201ENST00000408874 88 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 RPS29P8-201ENST00000445109 171 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 RPL17P19-201ENST00000489069 552 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 RNU6-107P-201ENST00000516643 102 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 RNA5SP94-201ENST00000516917 108 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 IGLVI-20-201ENST00000519296 130 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 MIR3612-201ENST00000579753 87 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 AC006380.1-201ENST00000603598 186 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 AL627230.5-201ENST00000619807 58 ntBASIC-0.19□□□□□ -2.44
SCN3AQ9NY46 SNORD115-30-201ENST00000364117 82 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 SNORA72.3-201ENST00000365074 132 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 SNORA24-201ENST00000384096 131 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 RNY3P10-201ENST00000384764 102 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 EIF1P2-201ENST00000428233 350 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 RNU6-1337P-201ENST00000516525 95 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.706-201ENST00000516933 99 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 AC012433.1-201ENST00000588916 398 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 AL354950.2-201ENST00000617939 290 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.243-201ENST00000364481 109 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 U8.7-201ENST00000364940 136 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 RNY4P3-201ENST00000365254 95 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 RNU6-282P-201ENST00000365357 103 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 RNA5SP475-201ENST00000410568 110 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 SNORD5.1-201ENST00000458800 75 ntBASIC-0.2□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 238.5 ms