Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 SNORD79.1-201ENST00000516069 84 ntBASIC1.02□□□□□ -2.25
ZCCHC3Q9NUD5 VN1R91P-201ENST00000594377 169 ntBASIC1.02□□□□□ -2.25
ZCCHC3Q9NUD5 AC004832.4-201ENST00000608952 331 ntBASIC1.02□□□□□ -2.25
ZCCHC3Q9NUD5 SNORA72.1-201ENST00000363485 129 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.146-201ENST00000363549 102 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 RNU6-324P-201ENST00000363957 106 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.336-201ENST00000365307 109 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.463-201ENST00000384271 102 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 AC063976.4-201ENST00000421971 163 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 RNU7-152P-201ENST00000458982 64 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 FGF7P4-201ENST00000509595 295 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 AC022616.4-201ENST00000522985 181 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 AC006600.1-201ENST00000572529 153 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 AL008636.1-201ENST00000625038 1018 ntBASIC1.01□□□□□ -2.25
ZCCHC3Q9NUD5 AL391516.1-201ENST00000554380 2449 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.70-201ENST00000362886 110 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.428-201ENST00000384078 102 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 MIR452-201ENST00000385020 85 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 RPS29P28-201ENST00000446439 141 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 SNORA25.10-201ENST00000515926 124 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 AC005972.2-201ENST00000604690 348 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 AL096861.1-201ENST00000610899 123 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 AC084781.2-201ENST00000615568 161 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 AC012676.2-201ENST00000619258 186 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 AC091925.1-201ENST00000623204 462 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 MIR4272-201ENST00000635924 64 ntBASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
ZCCHC3Q9NUD5 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 SNORA80D-201ENST00000384488 135 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.570-201ENST00000384750 101 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 MCFD2P1-201ENST00000417812 300 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 MRPL35P3-201ENST00000421557 364 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 AC002429.1-201ENST00000437672 148 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.632-201ENST00000459189 102 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 AC091951.2-201ENST00000500762 203 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 SNORD111.1-201ENST00000516421 86 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 SNORD116.3-201ENST00000517176 78 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 RN7SKP295-201ENST00000517264 153 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 AL355375.2-201ENST00000574825 175 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 MIR4423-201ENST00000580922 80 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 MIR4295-201ENST00000585286 85 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 RBM11P1-201ENST00000604951 799 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 PRELID3BP2-201ENST00000605362 201 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 AC010205.1-201ENST00000616668 449 ntBASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.187-201ENST00000363918 113 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.253-201ENST00000364562 112 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.303-201ENST00000364998 94 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 Y_RNA.329-201ENST00000365209 107 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 MIR522-201ENST00000385071 87 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 MIR1298-201ENST00000408783 112 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 MTCO2P27-201ENST00000420740 428 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 RPS20P10-201ENST00000451209 253 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 AC087343.1-201ENST00000477341 475 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 RPS26P48-201ENST00000491713 339 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 RNA5SP458-201ENST00000516188 119 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 SNORD114-21-201ENST00000606412 72 ntBASIC0.98□□□□□ -2.25
ZCCHC3Q9NUD5 RNU6-1175P-201ENST00000365200 107 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 SNORA22-201ENST00000383907 134 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 SNORA72-201ENST00000384339 132 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 SNORA22C-201ENST00000384614 134 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 AC005042.3-201ENST00000453230 174 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 snoU13.25-201ENST00000458945 104 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 U8.19-201ENST00000459095 133 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 SNORD19B-201ENST00000459623 84 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 UBL5P1-201ENST00000507979 193 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 MIR4769-201ENST00000584126 77 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 AL391903.3-201ENST00000612158 163 ntBASIC0.97□□□□□ -2.25
ZCCHC3Q9NUD5 RNU6-1115P-201ENST00000362490 106 ntBASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 AC117470.1-201ENST00000381974 330 ntBASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.496-201ENST00000384444 101 ntBASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 RNU6-710P-201ENST00000410424 105 ntBASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 AC245047.8-201ENST00000456455 284 ntBASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 MIR3192-201ENST00000584920 77 ntBASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
ZCCHC3Q9NUD5 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.95□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.327-201ENST00000365201 102 ntBASIC0.95□□□□□ -2.26
ZCCHC3Q9NUD5 RNU6-969P-201ENST00000383900 105 ntBASIC0.95□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.462-201ENST00000384268 102 ntBASIC0.95□□□□□ -2.26
ZCCHC3Q9NUD5 RNU7-21P-201ENST00000459430 62 ntBASIC0.95□□□□□ -2.26
ZCCHC3Q9NUD5 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.95□□□□□ -2.26
ZCCHC3Q9NUD5 RNU6-875P-201ENST00000516488 106 ntBASIC0.95□□□□□ -2.26
ZCCHC3Q9NUD5 AL020996.3-201ENST00000606617 222 ntBASIC0.95□□□□□ -2.26
ZCCHC3Q9NUD5 snoU13.31-201ENST00000607291 104 ntBASIC0.95□□□□□ -2.26
ZCCHC3Q9NUD5 SNORA75.2-201ENST00000391138 150 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 SNORA75.3-201ENST00000391231 150 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms