Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.73□□□□□ -2.29
RFX3P48380 MIR5000-201ENST00000577717 103 ntBASIC0.73□□□□□ -2.29
RFX3P48380 PRELID3BP2-201ENST00000605362 201 ntBASIC0.73□□□□□ -2.29
RFX3P48380 AC108706.1-201ENST00000611053 297 ntBASIC0.73□□□□□ -2.29
RFX3P48380 MIR6515-201ENST00000619843 57 ntBASIC0.73□□□□□ -2.29
RFX3P48380 Y_RNA.166-201ENST00000363730 102 ntBASIC0.72□□□□□ -2.29
RFX3P48380 SNORD115-30-201ENST00000364117 82 ntBASIC0.72□□□□□ -2.29
RFX3P48380 RNU6-767P-201ENST00000384132 107 ntBASIC0.72□□□□□ -2.29
RFX3P48380 RNU6-163P-201ENST00000384396 106 ntBASIC0.72□□□□□ -2.29
RFX3P48380 MIR452-201ENST00000385020 85 ntBASIC0.72□□□□□ -2.29
RFX3P48380 MIR605-201ENST00000385078 83 ntBASIC0.72□□□□□ -2.29
RFX3P48380 SNORA69.1-201ENST00000390904 137 ntBASIC0.72□□□□□ -2.29
RFX3P48380 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.72□□□□□ -2.29
RFX3P48380 AL606490.4-201ENST00000423117 127 ntBASIC0.72□□□□□ -2.29
RFX3P48380 U8.19-201ENST00000459095 133 ntBASIC0.72□□□□□ -2.29
RFX3P48380 RNU7-30P-201ENST00000516835 62 ntBASIC0.72□□□□□ -2.29
RFX3P48380 AC022616.4-201ENST00000522985 181 ntBASIC0.72□□□□□ -2.29
RFX3P48380 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.72□□□□□ -2.29
RFX3P48380 CYP3A137P-201ENST00000562436 69 ntBASIC0.72□□□□□ -2.29
RFX3P48380 AC006380.1-201ENST00000603598 186 ntBASIC0.72□□□□□ -2.29
RFX3P48380 MIR1244-1-201ENST00000612829 85 ntBASIC0.72□□□□□ -2.29
RFX3P48380 MIR1244-3-201ENST00000635744 85 ntBASIC0.72□□□□□ -2.29
RFX3P48380 MIR1244-2-201ENST00000636449 85 ntBASIC0.72□□□□□ -2.29
RFX3P48380 MIR1244-4-202ENST00000636813 85 ntBASIC0.72□□□□□ -2.29
RFX3P48380 U8.5-201ENST00000364528 136 ntBASIC0.71□□□□□ -2.3
RFX3P48380 RNU6-99P-201ENST00000364721 107 ntBASIC0.71□□□□□ -2.3
RFX3P48380 Y_RNA.336-201ENST00000365307 109 ntBASIC0.71□□□□□ -2.3
RFX3P48380 Y_RNA.466-201ENST00000384294 113 ntBASIC0.71□□□□□ -2.3
RFX3P48380 RPS3AP1-201ENST00000413190 320 ntBASIC0.71□□□□□ -2.3
RFX3P48380 AL354751.2-201ENST00000415471 210 ntBASIC0.71□□□□□ -2.3
RFX3P48380 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.71□□□□□ -2.3
RFX3P48380 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.71□□□□□ -2.3
RFX3P48380 AC245047.8-201ENST00000456455 284 ntBASIC0.71□□□□□ -2.3
RFX3P48380 snoU13.25-201ENST00000458945 104 ntBASIC0.71□□□□□ -2.3
RFX3P48380 RNU7-90P-201ENST00000459216 62 ntBASIC0.71□□□□□ -2.3
RFX3P48380 RNU7-21P-201ENST00000459430 62 ntBASIC0.71□□□□□ -2.3
RFX3P48380 AC069439.1-201ENST00000494739 167 ntBASIC0.71□□□□□ -2.3
RFX3P48380 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.71□□□□□ -2.3
RFX3P48380 RNU6-408P-201ENST00000515910 100 ntBASIC0.71□□□□□ -2.3
RFX3P48380 SNORD111.1-201ENST00000516421 86 ntBASIC0.71□□□□□ -2.3
RFX3P48380 Y_RNA.691-201ENST00000516611 103 ntBASIC0.71□□□□□ -2.3
RFX3P48380 RNU6-63P-201ENST00000516690 95 ntBASIC0.71□□□□□ -2.3
RFX3P48380 RNU6-264P-201ENST00000517134 104 ntBASIC0.71□□□□□ -2.3
RFX3P48380 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.71□□□□□ -2.3
RFX3P48380 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
RFX3P48380 MIR4762-201ENST00000585261 75 ntBASIC0.71□□□□□ -2.3
RFX3P48380 AC068790.6-201ENST00000602558 258 ntBASIC0.71□□□□□ -2.3
RFX3P48380 AL391903.3-201ENST00000612158 163 ntBASIC0.71□□□□□ -2.3
RFX3P48380 AC004467.1-201ENST00000615678 330 ntBASIC0.71□□□□□ -2.3
RFX3P48380 AL669831.3-213ENST00000636676 183 ntBASIC0.71□□□□□ -2.3
RFX3P48380 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.71□□□□□ -2.3
RFX3P48380 CASC19-280ENST00000642102 1351 ntBASIC0.7□□□□□ -2.3
RFX3P48380 HSBP1P2-201ENST00000299671 229 ntBASIC0.7□□□□□ -2.3
RFX3P48380 RNU6-845P-201ENST00000362578 103 ntBASIC0.7□□□□□ -2.3
RFX3P48380 RNU6-136P-201ENST00000384663 107 ntBASIC0.7□□□□□ -2.3
RFX3P48380 MIR598-201ENST00000384868 97 ntBASIC0.7□□□□□ -2.3
RFX3P48380 MIR526A1-201ENST00000384897 85 ntBASIC0.7□□□□□ -2.3
RFX3P48380 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
RFX3P48380 SNORA75.2-201ENST00000391138 150 ntBASIC0.7□□□□□ -2.3
RFX3P48380 SNORA75.3-201ENST00000391231 150 ntBASIC0.7□□□□□ -2.3
RFX3P48380 MIR942-201ENST00000401111 86 ntBASIC0.7□□□□□ -2.3
RFX3P48380 RNA5SP511-201ENST00000410487 115 ntBASIC0.7□□□□□ -2.3
RFX3P48380 AC093019.1-201ENST00000443135 252 ntBASIC0.7□□□□□ -2.3
RFX3P48380 FCF1P4-201ENST00000448326 183 ntBASIC0.7□□□□□ -2.3
RFX3P48380 Y_RNA.635-201ENST00000459041 101 ntBASIC0.7□□□□□ -2.3
RFX3P48380 RNU6-1337P-201ENST00000516525 95 ntBASIC0.7□□□□□ -2.3
RFX3P48380 RNU7-4P-201ENST00000516961 62 ntBASIC0.7□□□□□ -2.3
RFX3P48380 AC144568.1-201ENST00000520139 137 ntBASIC0.7□□□□□ -2.3
RFX3P48380 AC136628.3-201ENST00000521868 290 ntBASIC0.7□□□□□ -2.3
RFX3P48380 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.7□□□□□ -2.3
RFX3P48380 AL096861.1-201ENST00000610899 123 ntBASIC0.7□□□□□ -2.3
RFX3P48380 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.7□□□□□ -2.3
RFX3P48380 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
RFX3P48380 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
RFX3P48380 MIR15B-201ENST00000385045 98 ntBASIC0.69□□□□□ -2.3
RFX3P48380 Y_RNA.592-201ENST00000410274 109 ntBASIC0.69□□□□□ -2.3
RFX3P48380 RNU2-54P-201ENST00000410299 190 ntBASIC0.69□□□□□ -2.3
RFX3P48380 MRPS18CP6-201ENST00000423587 223 ntBASIC0.69□□□□□ -2.3
RFX3P48380 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.69□□□□□ -2.3
RFX3P48380 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.69□□□□□ -2.3
RFX3P48380 DEFB108E-201ENST00000524692 240 ntBASIC0.69□□□□□ -2.3
RFX3P48380 AC023442.1-201ENST00000531247 422 ntBASIC0.69□□□□□ -2.3
RFX3P48380 AC087588.2-201ENST00000617667 426 ntBASIC0.69□□□□□ -2.3
RFX3P48380 AC023934.1-201ENST00000574529 2389 ntBASIC0.69□□□□□ -2.3
RFX3P48380 SNORD68-201ENST00000363214 84 ntBASIC0.68□□□□□ -2.3
RFX3P48380 Y_RNA.279-201ENST00000364763 95 ntBASIC0.68□□□□□ -2.3
RFX3P48380 SNORD116-13-201ENST00000384408 92 ntBASIC0.68□□□□□ -2.3
RFX3P48380 RNY3P4-201ENST00000384428 101 ntBASIC0.68□□□□□ -2.3
RFX3P48380 SNORA75.6-201ENST00000391318 127 ntBASIC0.68□□□□□ -2.3
RFX3P48380 AL031003.1-201ENST00000404229 172 ntBASIC0.68□□□□□ -2.3
RFX3P48380 RNU6-1156P-201ENST00000410365 100 ntBASIC0.68□□□□□ -2.3
RFX3P48380 MTND1P4-201ENST00000435196 415 ntBASIC0.68□□□□□ -2.3
RFX3P48380 AC117454.1-201ENST00000491120 168 ntBASIC0.68□□□□□ -2.3
RFX3P48380 RNA5SP255-201ENST00000516370 107 ntBASIC0.68□□□□□ -2.3
RFX3P48380 RNU6-1116P-201ENST00000517269 99 ntBASIC0.68□□□□□ -2.3
RFX3P48380 MIR5690-201ENST00000583739 73 ntBASIC0.68□□□□□ -2.3
RFX3P48380 AC240442.1-201ENST00000616055 283 ntBASIC0.68□□□□□ -2.3
RFX3P48380 AL591926.4-201ENST00000616895 298 ntBASIC0.68□□□□□ -2.3
RFX3P48380 MIR6835-201ENST00000621552 64 ntBASIC0.68□□□□□ -2.3
RFX3P48380 AC098679.4-201ENST00000624241 654 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms