Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNU6-710P-201ENST00000410424 105 ntBASIC1.63□□□□□ -2.15
HMGB1P09429 AC002429.1-201ENST00000437672 148 ntBASIC1.63□□□□□ -2.15
HMGB1P09429 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.63□□□□□ -2.15
HMGB1P09429 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.63□□□□□ -2.15
HMGB1P09429 MIR4303-201ENST00000581299 66 ntBASIC1.63□□□□□ -2.15
HMGB1P09429 Y_RNA.570-201ENST00000384750 101 ntBASIC1.62□□□□□ -2.15
HMGB1P09429 RPL23AP36-201ENST00000413895 458 ntBASIC1.62□□□□□ -2.15
HMGB1P09429 RNU6-507P-201ENST00000516045 100 ntBASIC1.62□□□□□ -2.15
HMGB1P09429 RNA5SP61-201ENST00000516453 100 ntBASIC1.62□□□□□ -2.15
HMGB1P09429 AC093027.1-201ENST00000546698 429 ntBASIC1.62□□□□□ -2.15
HMGB1P09429 AC015712.3-201ENST00000559380 164 ntBASIC1.62□□□□□ -2.15
HMGB1P09429 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.62□□□□□ -2.15
HMGB1P09429 MIR7843-201ENST00000622274 79 ntBASIC1.62□□□□□ -2.15
HMGB1P09429 ZNF209P-201ENST00000593450 2304 ntBASIC1.62□□□□□ -2.15
HMGB1P09429 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.62□□□□□ -2.15
HMGB1P09429 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
HMGB1P09429 AC008163.1-202ENST00000636004 2889 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 Y_RNA.58-201ENST00000362807 102 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 Y_RNA.154-201ENST00000363624 102 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 RNY3P1-201ENST00000365085 102 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 RNY3-201ENST00000365484 102 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 SNORA72-201ENST00000384339 132 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 MIR758-201ENST00000390227 88 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 SNORD12-201ENST00000391002 90 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 AL390729.2-201ENST00000416137 156 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 FGF7P4-201ENST00000509595 295 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 RNU7-110P-201ENST00000516891 62 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 MIR4762-201ENST00000585261 75 ntBASIC1.61□□□□□ -2.15
HMGB1P09429 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HMGB1P09429 RNU6-1115P-201ENST00000362490 106 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 Y_RNA.341-201ENST00000365341 102 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 Y_RNA.496-201ENST00000384444 101 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 MIR522-201ENST00000385071 87 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 RNU6-131P-201ENST00000391144 107 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 MTND1P14-201ENST00000427400 950 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 AL160004.2-201ENST00000432935 350 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 RNU7-152P-201ENST00000458982 64 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 RPS23P4-201ENST00000487908 423 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 HMGN1P7-201ENST00000491722 313 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 AC108210.2-201ENST00000503681 201 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 SNORD45.4-201ENST00000516629 73 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 MIR5188-201ENST00000583467 113 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 MIR7974-201ENST00000615835 79 ntBASIC1.6□□□□□ -2.15
HMGB1P09429 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
HMGB1P09429 MRPL35P3-201ENST00000421557 364 ntBASIC1.59□□□□□ -2.15
HMGB1P09429 AL591704.2-201ENST00000421658 181 ntBASIC1.59□□□□□ -2.15
HMGB1P09429 SNORD124-201ENST00000459577 104 ntBASIC1.59□□□□□ -2.15
HMGB1P09429 UBL5P1-201ENST00000507979 193 ntBASIC1.59□□□□□ -2.15
HMGB1P09429 AC011373.1-201ENST00000607270 237 ntBASIC1.59□□□□□ -2.15
HMGB1P09429 AL512598.1-201ENST00000610158 273 ntBASIC1.59□□□□□ -2.15
HMGB1P09429 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
HMGB1P09429 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.59□□□□□ -2.15
HMGB1P09429 AL138825.1-201ENST00000618587 192 ntBASIC1.59□□□□□ -2.15
HMGB1P09429 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.59□□□□□ -2.15
HMGB1P09429 Y_RNA.263-201ENST00000364659 114 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 snoU2-30.1-201ENST00000365012 70 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 MIR19B1-201ENST00000384829 87 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 MIR136-201ENST00000385207 82 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 AC024067.1-201ENST00000426199 223 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 SNRPGP10-201ENST00000432323 225 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 MTND5P20-201ENST00000448677 143 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 Y_RNA.714-201ENST00000517065 90 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 MIR548S-201ENST00000581352 82 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 DEFB117-201ENST00000602356 141 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 AC012676.2-201ENST00000619258 186 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 AC112487.2-201ENST00000637950 304 ntBASIC1.58□□□□□ -2.16
HMGB1P09429 SNORA17.3-201ENST00000391159 129 ntBASIC1.57□□□□□ -2.16
HMGB1P09429 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.57□□□□□ -2.16
HMGB1P09429 AC245047.8-201ENST00000456455 284 ntBASIC1.57□□□□□ -2.16
HMGB1P09429 U8.19-201ENST00000459095 133 ntBASIC1.57□□□□□ -2.16
HMGB1P09429 AC136932.1-201ENST00000574771 208 ntBASIC1.57□□□□□ -2.16
HMGB1P09429 MIR3192-201ENST00000584920 77 ntBASIC1.57□□□□□ -2.16
HMGB1P09429 HSPE1P19-201ENST00000603327 295 ntBASIC1.57□□□□□ -2.16
HMGB1P09429 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.57□□□□□ -2.16
HMGB1P09429 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.57□□□□□ -2.16
HMGB1P09429 Y_RNA.80-201ENST00000362996 102 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 Y_RNA.485-201ENST00000384395 102 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.56□□□□□ -2.16
HMGB1P09429 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.56□□□□□ -2.16
HMGB1P09429 RNU1-123P-201ENST00000458950 160 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 RNU4-77P-201ENST00000516692 156 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 Y_RNA.702-201ENST00000516843 96 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 SNORA18.7-201ENST00000516910 131 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 POLR3GP1-201ENST00000594073 261 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 AC010205.1-201ENST00000616668 449 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 AL353997.5-201ENST00000618886 171 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 AL606534.2-204ENST00000635008 178 ntBASIC1.56□□□□□ -2.16
HMGB1P09429 Y_RNA.458-201ENST00000384240 102 ntBASIC1.55□□□□□ -2.16
HMGB1P09429 MIR520C-201ENST00000385005 87 ntBASIC1.55□□□□□ -2.16
HMGB1P09429 AL590004.1-201ENST00000405321 300 ntBASIC1.55□□□□□ -2.16
HMGB1P09429 RNU1-92P-201ENST00000517017 135 ntBASIC1.55□□□□□ -2.16
HMGB1P09429 MIR4801-201ENST00000582704 82 ntBASIC1.55□□□□□ -2.16
HMGB1P09429 AL121655.1-201ENST00000605811 308 ntBASIC1.55□□□□□ -2.16
HMGB1P09429 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.55□□□□□ -2.16
HMGB1P09429 SNORA75.2-201ENST00000391138 150 ntBASIC1.54□□□□□ -2.16
HMGB1P09429 SNORA75.3-201ENST00000391231 150 ntBASIC1.54□□□□□ -2.16
HMGB1P09429 RPS26P48-201ENST00000491713 339 ntBASIC1.54□□□□□ -2.16
HMGB1P09429 RNU6-976P-201ENST00000516086 111 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms