Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MRPS18CP6-201ENST00000423587 223 ntBASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 SNORA31.10-201ENST00000516482 106 ntBASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 SNORD78.2-201ENST00000391076 69 ntBASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 RNU7-152P-201ENST00000458982 64 ntBASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 SNORD19B-201ENST00000459623 84 ntBASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 MIR3937-201ENST00000580135 106 ntBASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 AL121890.5-201ENST00000620848 304 ntBASIC2.39□□□□□ -2.03
SHROOM4Q9ULL8 AL442644.1-201ENST00000454390 3105 ntBASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 RNU6-961P-201ENST00000363893 105 ntBASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 RNY3P11-201ENST00000364153 102 ntBASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 Y_RNA.393-201ENST00000383936 102 ntBASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 RNU6-376P-201ENST00000384731 106 ntBASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 SNORA70.12-201ENST00000516084 153 ntBASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 AC021506.2-201ENST00000612354 169 ntBASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 MIR6079-201ENST00000635807 62 ntBASIC2.38□□□□□ -2.03
SHROOM4Q9ULL8 Y_RNA.27-201ENST00000362540 103 ntBASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 Y_RNA.463-201ENST00000384271 102 ntBASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 MT-TD-201ENST00000387419 68 ntBASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 MIR873-201ENST00000401120 77 ntBASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 AC018865.2-201ENST00000423631 129 ntBASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 RNU6-1012P-201ENST00000516606 109 ntBASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 SUMO2P16-201ENST00000519475 264 ntBASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 AC005828.6-201ENST00000606610 232 ntBASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 AL021879.1-201ENST00000611756 288 ntBASIC2.37□□□□□ -2.03
SHROOM4Q9ULL8 SNX2P2-201ENST00000424553 323 ntBASIC2.36□□□□□ -2.03
SHROOM4Q9ULL8 AC027119.1-201ENST00000440877 241 ntBASIC2.36□□□□□ -2.03
SHROOM4Q9ULL8 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.36□□□□□ -2.03
SHROOM4Q9ULL8 MTND3P22-201ENST00000510932 243 ntBASIC2.36□□□□□ -2.03
SHROOM4Q9ULL8 RNU7-28P-201ENST00000516759 62 ntBASIC2.36□□□□□ -2.03
SHROOM4Q9ULL8 RNU6-341P-201ENST00000516973 96 ntBASIC2.36□□□□□ -2.03
SHROOM4Q9ULL8 AP002001.1-203ENST00000534002 267 ntBASIC2.36□□□□□ -2.03
SHROOM4Q9ULL8 MIR5000-201ENST00000577717 103 ntBASIC2.36□□□□□ -2.03
SHROOM4Q9ULL8 AC015688.6-201ENST00000577737 104 ntBASIC2.36□□□□□ -2.03
SHROOM4Q9ULL8 MIR302D-201ENST00000362275 68 ntBASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 Y_RNA.265-201ENST00000364677 108 ntBASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 RNU6-1065P-201ENST00000384513 106 ntBASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 MIR513A1-201ENST00000385138 129 ntBASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 MRPL35P1-201ENST00000404272 572 ntBASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 AC096644.2-201ENST00000429278 159 ntBASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 MIR4659A-201ENST00000580269 81 ntBASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
SHROOM4Q9ULL8 RNA5SP259-201ENST00000365541 109 ntBASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 AL137792.2-201ENST00000443484 235 ntBASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 AC093852.1-201ENST00000503587 266 ntBASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 RNU6-970P-201ENST00000516312 107 ntBASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 AC006600.1-201ENST00000572529 153 ntBASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 RN7SL793P-201ENST00000583259 296 ntBASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 AC005176.2-201ENST00000596933 147 ntBASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 AP001485.1-201ENST00000604799 199 ntBASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 AL138825.1-201ENST00000618587 192 ntBASIC2.34□□□□□ -2.03
SHROOM4Q9ULL8 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.04
SHROOM4Q9ULL8 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 AC019176.1-201ENST00000518519 225 ntBASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 AC023442.1-201ENST00000531247 422 ntBASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 AC040896.1-201ENST00000613819 479 ntBASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 AC138305.3-201ENST00000624988 240 ntBASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 AC112487.2-201ENST00000637950 304 ntBASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 Y_RNA.267-201ENST00000364679 109 ntBASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 RNU6-20P-201ENST00000384106 107 ntBASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 AC090821.2-201ENST00000523552 176 ntBASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 AL390123.1-201ENST00000603216 237 ntBASIC2.33□□□□□ -2.04
SHROOM4Q9ULL8 RNU6ATAC2P-201ENST00000387943 126 ntBASIC2.32□□□□□ -2.04
SHROOM4Q9ULL8 HMGN1P33-201ENST00000432945 451 ntBASIC2.32□□□□□ -2.04
SHROOM4Q9ULL8 RNU2-56P-201ENST00000516826 190 ntBASIC2.32□□□□□ -2.04
SHROOM4Q9ULL8 AC091178.2-201ENST00000584401 117 ntBASIC2.32□□□□□ -2.04
SHROOM4Q9ULL8 AC240442.1-201ENST00000616055 283 ntBASIC2.32□□□□□ -2.04
SHROOM4Q9ULL8 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 RNU4-73P-201ENST00000363164 141 ntBASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 RNU2-54P-201ENST00000410299 190 ntBASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 RPL30P13-201ENST00000418873 348 ntBASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 AC099513.1-201ENST00000490423 301 ntBASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 Y_RNA.661-201ENST00000516003 99 ntBASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 RNU2-12P-201ENST00000517216 168 ntBASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 AL078604.3-201ENST00000615580 211 ntBASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 AL513423.1-201ENST00000621695 132 ntBASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.31□□□□□ -2.04
SHROOM4Q9ULL8 Y_RNA.58-201ENST00000362807 102 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 Y_RNA.154-201ENST00000363624 102 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 RNY3P1-201ENST00000365085 102 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 RNY3-201ENST00000365484 102 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 RNU6-136P-201ENST00000384663 107 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 MIR520G-201ENST00000385064 90 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 HSPE1P13-201ENST00000451143 297 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 AL049830.1-201ENST00000468034 425 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 AC091021.1-201ENST00000468051 388 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 RNU6-976P-201ENST00000516086 111 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 AP002004.2-201ENST00000531656 154 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 RPS29P30-201ENST00000600975 111 ntBASIC2.3□□□□□ -2.04
SHROOM4Q9ULL8 AC073349.3-201ENST00000617616 186 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 137.1 ms