Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNA5SP168-201ENST00000516642 112 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 RNU2-12P-201ENST00000517216 168 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 AP002004.2-201ENST00000531656 154 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.15□□□□□ -2.23
LHX3Q9UBR4 AC093027.1-201ENST00000546698 429 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 AL513534.2-201ENST00000603836 250 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 AC138305.3-201ENST00000624988 240 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 AC005592.1-201ENST00000566527 1640 ntBASIC1.15□□□□□ -2.23
LHX3Q9UBR4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.14□□□□□ -2.23
LHX3Q9UBR4 SNORD115-30-201ENST00000364117 82 ntBASIC1.14□□□□□ -2.23
LHX3Q9UBR4 SNORA25.8-201ENST00000364831 128 ntBASIC1.14□□□□□ -2.23
LHX3Q9UBR4 MIR520G-201ENST00000385064 90 ntBASIC1.14□□□□□ -2.23
LHX3Q9UBR4 SNORD78.2-201ENST00000391076 69 ntBASIC1.14□□□□□ -2.23
LHX3Q9UBR4 MTCO2P27-201ENST00000420740 428 ntBASIC1.14□□□□□ -2.23
LHX3Q9UBR4 AC092991.1-201ENST00000477176 376 ntBASIC1.14□□□□□ -2.23
LHX3Q9UBR4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.14□□□□□ -2.23
LHX3Q9UBR4 AC008269.2-201ENST00000561915 1105 ntBASIC1.14□□□□□ -2.23
LHX3Q9UBR4 MIR4659A-201ENST00000580269 81 ntBASIC1.14□□□□□ -2.23
LHX3Q9UBR4 MIR548S-201ENST00000581352 82 ntBASIC1.14□□□□□ -2.23
LHX3Q9UBR4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
LHX3Q9UBR4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.58-201ENST00000362807 102 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNU6-199P-201ENST00000362954 107 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNU6-626P-201ENST00000363354 107 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.154-201ENST00000363624 102 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNY3P1-201ENST00000365085 102 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNY3-201ENST00000365484 102 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNU6-20P-201ENST00000384106 107 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.463-201ENST00000384271 102 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNU6-424P-201ENST00000384367 105 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNU6-1009P-201ENST00000390996 107 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNA5SP482-201ENST00000391269 118 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 U8.16-201ENST00000391279 133 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 AL591704.2-201ENST00000421658 181 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RPEP5-201ENST00000441137 268 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 MTND5P20-201ENST00000448677 143 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 OR9P1P-201ENST00000496431 281 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNU6-1012P-201ENST00000516606 109 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 RNU6-1096P-201ENST00000517089 102 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 AC006600.1-201ENST00000572529 153 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 AC005176.2-201ENST00000596933 147 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 AC006380.1-201ENST00000603598 186 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.13□□□□□ -2.23
LHX3Q9UBR4 AC091895.1-201ENST00000624494 256 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 AC068647.2-201ENST00000637380 353 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 AC112487.2-201ENST00000637950 304 ntBASIC1.13□□□□□ -2.23
LHX3Q9UBR4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.187-201ENST00000363918 113 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.428-201ENST00000384078 102 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 RNA5SP511-201ENST00000410487 115 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 RNU5A-5P-201ENST00000411054 116 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.12□□□□□ -2.23
LHX3Q9UBR4 DYNLT3P2-201ENST00000442517 295 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 AC093850.1-201ENST00000454121 251 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 SNORD19B-201ENST00000459623 84 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 AL049830.1-201ENST00000468034 425 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 FGF7P4-201ENST00000509595 295 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.661-201ENST00000516003 99 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 RNU6-922P-201ENST00000516753 99 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 AC104985.2-201ENST00000620598 500 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 U6.92-201ENST00000636464 89 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 AC091812.1-201ENST00000432235 1948 ntBASIC1.12□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.70-201ENST00000362886 110 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.146-201ENST00000363549 102 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 RNU6-324P-201ENST00000363957 106 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.263-201ENST00000364659 114 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 SNORA25.9-201ENST00000365087 128 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 RNY3P14-201ENST00000384309 102 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 MIR150-201ENST00000385048 84 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 MIR618-201ENST00000385287 98 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 AL031003.1-201ENST00000404229 172 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 RNU2-54P-201ENST00000410299 190 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.11□□□□□ -2.23
LHX3Q9UBR4 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.11□□□□□ -2.23
LHX3Q9UBR4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.11□□□□□ -2.23
LHX3Q9UBR4 HMGN1P7-201ENST00000491722 313 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 RNU7-12P-201ENST00000516030 62 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 RNU6-966P-201ENST00000516479 104 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 RNU6-1337P-201ENST00000516525 95 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.702-201ENST00000516843 96 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 RNU6-165P-201ENST00000517170 99 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 SNORD116.3-201ENST00000517176 78 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 AL358944.1-201ENST00000528537 144 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.11□□□□□ -2.23
LHX3Q9UBR4 AL050343.2-201ENST00000607338 280 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 GHRLOS.1-201ENST00000610995 70 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 AC240442.1-201ENST00000616055 283 ntBASIC1.11□□□□□ -2.23
LHX3Q9UBR4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.11□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.27-201ENST00000362540 103 ntBASIC1.1□□□□□ -2.23
LHX3Q9UBR4 Y_RNA.496-201ENST00000384444 101 ntBASIC1.1□□□□□ -2.23
LHX3Q9UBR4 MIR653-201ENST00000385279 96 ntBASIC1.1□□□□□ -2.23
LHX3Q9UBR4 AL354751.2-201ENST00000415471 210 ntBASIC1.1□□□□□ -2.23
LHX3Q9UBR4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.1□□□□□ -2.23
LHX3Q9UBR4 RNU7-152P-201ENST00000458982 64 ntBASIC1.1□□□□□ -2.23
LHX3Q9UBR4 COX6CP14-201ENST00000469580 174 ntBASIC1.1□□□□□ -2.23
LHX3Q9UBR4 SNORA70.12-201ENST00000516084 153 ntBASIC1.1□□□□□ -2.23
LHX3Q9UBR4 RNU6-155P-201ENST00000516347 100 ntBASIC1.1□□□□□ -2.23
LHX3Q9UBR4 RNU6-911P-201ENST00000516523 104 ntBASIC1.1□□□□□ -2.23
LHX3Q9UBR4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.1□□□□□ -2.23
LHX3Q9UBR4 VN1R91P-201ENST00000594377 169 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms