Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 AC120024.3-201ENST00000603167 156 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 PRELID3BP2-201ENST00000605362 201 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 AC007014.2-201ENST00000615581 479 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 AL008636.1-201ENST00000625038 1018 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 MIR6866-201ENST00000638146 69 ntBASIC0.76□□□□□ -2.29
NUDCD3Q8IVD9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 SNORD114-7-201ENST00000362520 77 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 SNORD68-201ENST00000363214 84 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 RNU4-40P-201ENST00000364351 143 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 MIR200A-201ENST00000384875 90 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 RNU2-64P-201ENST00000411315 191 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 RPL23AP50-201ENST00000434149 455 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 AC245047.8-201ENST00000456455 284 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 RPL17P19-201ENST00000489069 552 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-408P-201ENST00000515910 100 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 RNA5SP102-201ENST00000516865 106 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 AC023442.1-201ENST00000531247 422 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 AC005899.2-201ENST00000584353 90 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 MIR3192-201ENST00000584920 77 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 AL391903.3-201ENST00000612158 163 ntBASIC0.75□□□□□ -2.29
NUDCD3Q8IVD9 Y_RNA.6-201ENST00000362350 114 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 SNORD115-30-201ENST00000364117 82 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-99P-201ENST00000364721 107 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 Y_RNA.336-201ENST00000365307 109 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 Y_RNA.361-201ENST00000365515 120 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-1310P-201ENST00000384153 107 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 SNORA75.4-201ENST00000391278 119 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 MIR942-201ENST00000401111 86 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 Y_RNA.621-201ENST00000411065 96 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 MIR2053-201ENST00000459295 91 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 AC116353.2-201ENST00000505332 712 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-1337P-201ENST00000516525 95 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-1213P-201ENST00000517075 94 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 RNU2-12P-201ENST00000517216 168 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 AC090142.3-201ENST00000519012 385 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 MIR4781-201ENST00000585250 76 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 AC060780.3-201ENST00000589464 80 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 AC068790.6-201ENST00000602558 258 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 AC004467.1-201ENST00000615678 330 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 AC027279.3-201ENST00000625055 122 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 AC073869.6-201ENST00000640656 341 ntBASIC0.74□□□□□ -2.29
NUDCD3Q8IVD9 SNORD116-13-201ENST00000384408 92 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 AL162725.1-201ENST00000435405 301 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 RPEP5-201ENST00000441137 268 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 RNU7-90P-201ENST00000459216 62 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 AC114811.1-201ENST00000507207 168 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-307P-201ENST00000516743 106 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 AC055872.1-201ENST00000570978 278 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 AC011712.1-201ENST00000588959 234 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 AC084782.3-201ENST00000612282 578 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 AL591926.4-201ENST00000616895 298 ntBASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.73□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-961P-201ENST00000363893 105 ntBASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 MIR608-201ENST00000384820 100 ntBASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 RPS3AP1-201ENST00000413190 320 ntBASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 MTND5P15-201ENST00000434246 349 ntBASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 AC093019.1-201ENST00000443135 252 ntBASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-120P-201ENST00000516077 103 ntBASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 RNU6-358P-201ENST00000516564 75 ntBASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 MIR3973-201ENST00000579824 107 ntBASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 AL669831.3-213ENST00000636676 183 ntBASIC0.72□□□□□ -2.29
NUDCD3Q8IVD9 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 Y_RNA.72-201ENST00000362894 103 ntBASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 RNU6-926P-201ENST00000384075 107 ntBASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 MIR452-201ENST00000385020 85 ntBASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 MIR1298-201ENST00000408783 112 ntBASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 Y_RNA.655-201ENST00000515919 96 ntBASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 RNU7-30P-201ENST00000516835 62 ntBASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 MIR2355-201ENST00000517199 87 ntBASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 AC136628.3-201ENST00000521868 290 ntBASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 AC087588.2-201ENST00000617667 426 ntBASIC0.71□□□□□ -2.3
NUDCD3Q8IVD9 CASC19-280ENST00000642102 1351 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 HSBP1P2-201ENST00000299671 229 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 U8.5-201ENST00000364528 136 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 RNU6-1105P-201ENST00000384774 107 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 MIR605-201ENST00000385078 83 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 AL031003.1-201ENST00000404229 172 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 RNU4-14P-201ENST00000410858 122 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 MTND4P28-201ENST00000426217 387 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 MTND1P34-201ENST00000438556 671 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 RPS20P10-201ENST00000451209 253 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 SNORA70.12-201ENST00000516084 153 ntBASIC0.7□□□□□ -2.3
NUDCD3Q8IVD9 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 191.9 ms