Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 RPS26P48-201ENST00000491713 339 ntBASIC0.77□□□□□ -2.29
TRIM40Q6P9F5 SCARNA16.2-201ENST00000516520 172 ntBASIC0.77□□□□□ -2.29
TRIM40Q6P9F5 RNU6-63P-201ENST00000516690 95 ntBASIC0.77□□□□□ -2.29
TRIM40Q6P9F5 MIR2355-201ENST00000517199 87 ntBASIC0.77□□□□□ -2.29
TRIM40Q6P9F5 RNU6-1116P-201ENST00000517269 99 ntBASIC0.77□□□□□ -2.29
TRIM40Q6P9F5 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.77□□□□□ -2.29
TRIM40Q6P9F5 AC060780.3-201ENST00000589464 80 ntBASIC0.77□□□□□ -2.29
TRIM40Q6P9F5 AC073869.6-201ENST00000640656 341 ntBASIC0.77□□□□□ -2.29
TRIM40Q6P9F5 Y_RNA.72-201ENST00000362894 103 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 RNU1-36P-201ENST00000365130 165 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 Y_RNA.361-201ENST00000365515 120 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 RNU6-969P-201ENST00000383900 105 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 RNU6-136P-201ENST00000384663 107 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 MIR200A-201ENST00000384875 90 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 AC069439.1-201ENST00000494739 167 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 CYCTP-201ENST00000504253 315 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 SNORD111.1-201ENST00000516421 86 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 AC120024.3-201ENST00000603167 156 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 AC108706.1-201ENST00000611053 297 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 MIR1244-1-201ENST00000612829 85 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 AC027279.3-201ENST00000625055 122 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 MIR1244-3-201ENST00000635744 85 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 MIR1244-2-201ENST00000636449 85 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 MIR1244-4-202ENST00000636813 85 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 MIR6866-201ENST00000638146 69 ntBASIC0.76□□□□□ -2.29
TRIM40Q6P9F5 Y_RNA.116-201ENST00000363292 103 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 SNORA75.4-201ENST00000391278 119 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 AC114482.1-201ENST00000418010 247 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 RPL23AP50-201ENST00000434149 455 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 ELOCP24-201ENST00000456370 334 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 PDCD5P2-201ENST00000507570 312 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 Y_RNA.655-201ENST00000515919 96 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 RNU6-358P-201ENST00000516564 75 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 AC011712.1-201ENST00000588959 234 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 AL096861.1-201ENST00000610899 123 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 AC106800.4-201ENST00000614905 153 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 AC008163.1-202ENST00000636004 2889 ntBASIC0.75□□□□□ -2.29
TRIM40Q6P9F5 SNORD115-30-201ENST00000364117 82 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 RNU6-163P-201ENST00000384396 106 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 RNA5SP511-201ENST00000410487 115 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 AL354751.2-201ENST00000415471 210 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 AL162725.1-201ENST00000435405 301 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 AC245047.8-201ENST00000456455 284 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 MIR2053-201ENST00000459295 91 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 RNU7-21P-201ENST00000459430 62 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 RNU2-12P-201ENST00000517216 168 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 PRELID3BP2-201ENST00000605362 201 ntBASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
TRIM40Q6P9F5 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 RNU6-99P-201ENST00000364721 107 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 Y_RNA.336-201ENST00000365307 109 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 SNORA75.2-201ENST00000391138 150 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 SNORA75.3-201ENST00000391231 150 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 MIR548J-201ENST00000408833 112 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 PIGPP3-201ENST00000425307 415 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 AC004941.2-201ENST00000427009 228 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 RNU6-408P-201ENST00000515910 100 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 SNORA70.12-201ENST00000516084 153 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 RNU6-1337P-201ENST00000516525 95 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 AC023442.1-201ENST00000531247 422 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 AC068790.6-201ENST00000602558 258 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 AL078603.1-201ENST00000603824 313 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 AL391903.3-201ENST00000612158 163 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 MIR6788-201ENST00000618842 66 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 AL008636.1-201ENST00000625038 1018 ntBASIC0.73□□□□□ -2.29
TRIM40Q6P9F5 SNORD68-201ENST00000363214 84 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 SNORD116-13-201ENST00000384408 92 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 RNU6-1105P-201ENST00000384774 107 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 MIR518E-201ENST00000385252 88 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 AC006461.1-201ENST00000412637 326 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 MTND4P28-201ENST00000426217 387 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 RPS4XP11-201ENST00000446897 772 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 snoU13.25-201ENST00000458945 104 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 RNU7-90P-201ENST00000459216 62 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 Y_RNA.673-201ENST00000516306 88 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 RNU7-30P-201ENST00000516835 62 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 AC004467.1-201ENST00000615678 330 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 AL669831.3-213ENST00000636676 183 ntBASIC0.72□□□□□ -2.29
TRIM40Q6P9F5 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 RNU6-961P-201ENST00000363893 105 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 U8.5-201ENST00000364528 136 ntBASIC0.71□□□□□ -2.3
TRIM40Q6P9F5 MIR452-201ENST00000385020 85 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms