Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL669831.3-213ENST00000636676 183 ntBASIC0.96□□□□□ -2.26
CCDC40Q4G0X9 SNORD115-30-201ENST00000364117 82 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 RNU1-36P-201ENST00000365130 165 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 RNU6-767P-201ENST00000384132 107 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 MIR532-201ENST00000385025 91 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 AL354751.2-201ENST00000415471 210 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 POLR2J4-204ENST00000418424 324 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 ELOCP24-201ENST00000456370 334 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 ACA64.5-201ENST00000516207 127 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 Y_RNA.676-201ENST00000516393 96 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 RNU2-12P-201ENST00000517216 168 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 AC120024.3-201ENST00000603167 156 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 AC004832.4-201ENST00000608952 331 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 AL096861.1-201ENST00000610899 123 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 AC027514.1-201ENST00000588561 1603 ntBASIC0.95□□□□□ -2.26
CCDC40Q4G0X9 MIR96-201ENST00000362288 78 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 RNU6-961P-201ENST00000363893 105 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 SNORD114-24-201ENST00000365029 72 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 RNU6-969P-201ENST00000383900 105 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 RNU6-1080P-201ENST00000383982 107 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 RNU4-14P-201ENST00000410858 122 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 PIGPP3-201ENST00000425307 415 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 MTND4P28-201ENST00000426217 387 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 CYCTP-201ENST00000504253 315 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 RNU6-120P-201ENST00000516077 103 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 RNU6-1337P-201ENST00000516525 95 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 AC055872.1-201ENST00000570978 278 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 MIR4698-201ENST00000577795 80 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 AC087588.2-201ENST00000617667 426 ntBASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC40Q4G0X9 AC008163.1-202ENST00000636004 2889 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 SNORD68-201ENST00000363214 84 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 SNORD114-2-201ENST00000363953 78 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 RNU6-163P-201ENST00000384396 106 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 AL162725.1-201ENST00000435405 301 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 RPS4XP11-201ENST00000446897 772 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 FGF7P6-202ENST00000451282 293 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 MTND4P17-201ENST00000470444 350 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 SNORD111.1-201ENST00000516421 86 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 AC068790.6-201ENST00000602558 258 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 AC013244.2-201ENST00000603396 103 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 FAM71BP1-201ENST00000604431 523 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 PRELID3BP2-201ENST00000605362 201 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 AC211469.2-201ENST00000605461 205 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 AL008636.1-201ENST00000625038 1018 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 AC027279.3-201ENST00000625055 122 ntBASIC0.93□□□□□ -2.26
CCDC40Q4G0X9 Y_RNA.577-201ENST00000384794 101 ntBASIC0.92□□□□□ -2.26
CCDC40Q4G0X9 SNORA69.1-201ENST00000390904 137 ntBASIC0.92□□□□□ -2.26
CCDC40Q4G0X9 Y_RNA.592-201ENST00000410274 109 ntBASIC0.92□□□□□ -2.26
CCDC40Q4G0X9 Y_RNA.621-201ENST00000411065 96 ntBASIC0.92□□□□□ -2.26
CCDC40Q4G0X9 RPEP5-201ENST00000441137 268 ntBASIC0.92□□□□□ -2.26
CCDC40Q4G0X9 snoU13.25-201ENST00000458945 104 ntBASIC0.92□□□□□ -2.26
CCDC40Q4G0X9 RNU7-21P-201ENST00000459430 62 ntBASIC0.92□□□□□ -2.26
CCDC40Q4G0X9 Y_RNA.691-201ENST00000516611 103 ntBASIC0.92□□□□□ -2.26
CCDC40Q4G0X9 RNU6-845P-201ENST00000362578 103 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 Y_RNA.279-201ENST00000364763 95 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 SNORA25.9-201ENST00000365087 128 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 Y_RNA.336-201ENST00000365307 109 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 RNU6-926P-201ENST00000384075 107 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 MIR200A-201ENST00000384875 90 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 MIR625-201ENST00000385047 85 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 MIR146A-201ENST00000385201 99 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 SNORA75.2-201ENST00000391138 150 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 SNORA75.3-201ENST00000391231 150 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 RNU6-1156P-201ENST00000410365 100 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 AC245047.8-201ENST00000456455 284 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 AC114811.1-201ENST00000507207 168 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 PDCD5P2-201ENST00000507570 312 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 SNORA70.12-201ENST00000516084 153 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 AL391903.3-201ENST00000612158 163 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 MIR6857-201ENST00000613267 93 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 AL591926.4-201ENST00000616895 298 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 AC098679.4-201ENST00000624241 654 ntBASIC0.91□□□□□ -2.26
CCDC40Q4G0X9 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.9□□□□□ -2.26
CCDC40Q4G0X9 Y_RNA.101-201ENST00000363154 102 ntBASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 AL031003.1-201ENST00000404229 172 ntBASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 MIR1276-201ENST00000408707 83 ntBASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 Y_RNA.646-201ENST00000410980 101 ntBASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 AC093019.1-201ENST00000443135 252 ntBASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 Y_RNA.635-201ENST00000459041 101 ntBASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 MIR3192-201ENST00000584920 77 ntBASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 MIR6767-201ENST00000637302 66 ntBASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 CASC19-280ENST00000642102 1351 ntBASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
CCDC40Q4G0X9 Y_RNA.160-201ENST00000363677 92 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 Y_RNA.166-201ENST00000363730 102 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 U8.5-201ENST00000364528 136 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 SNORD116-13-201ENST00000384408 92 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 RNU6-1105P-201ENST00000384774 107 ntBASIC0.89□□□□□ -2.27
CCDC40Q4G0X9 MIR452-201ENST00000385020 85 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms