Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 Y_RNA.451-201ENST00000384200 100 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 Y_RNA.524-201ENST00000384564 100 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 Y_RNA.561-201ENST00000384694 100 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AC243428.1-201ENST00000421099 264 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 MTATP6P13-201ENST00000438531 667 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 PCNPP5-201ENST00000452246 481 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AC233266.1-201ENST00000454518 96 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AP000870.1-201ENST00000472927 406 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 RNU4-54P-201ENST00000516428 129 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 RNU6-256P-201ENST00000516747 97 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 MIR3192-201ENST00000584920 77 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AL096861.1-201ENST00000610899 123 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AC242852.1-201ENST00000612151 96 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AC244015.1-201ENST00000622301 99 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.37□□□□□ -2.35
COL18A1P39060 SNORD89-201ENST00000390981 114 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 SNORD99-201ENST00000408612 74 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AL035398.1-201ENST00000430869 322 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AL162725.1-201ENST00000435405 301 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AC098869.1-201ENST00000481627 292 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AC109810.1-201ENST00000534066 224 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AC090617.3-201ENST00000573670 475 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AC023934.1-201ENST00000574529 2389 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AL136317.1-201ENST00000612653 226 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 AC007014.2-201ENST00000615581 479 ntBASIC0.37□□□□□ -2.35
COL18A1P39060 MIR409-201ENST00000362237 79 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 SNORD114-7-201ENST00000362520 77 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 RNU6-1252P-201ENST00000363054 104 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 RNU6-595P-201ENST00000363944 107 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 Y_RNA.498-201ENST00000384460 102 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 RNU6-30P-201ENST00000384561 107 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 RNU6-1067P-201ENST00000384752 107 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 RNU6-332P-201ENST00000391193 108 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 SNORD111-201ENST00000408139 94 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 RPL23AP50-201ENST00000434149 455 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 RNU6-1110P-201ENST00000516462 101 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 RNU6-1291P-201ENST00000516591 104 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 Y_RNA.706-201ENST00000516933 99 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.36□□□□□ -2.35
COL18A1P39060 AC093023.1-201ENST00000547375 507 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 MIR5190-201ENST00000581537 80 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 uc_338.17-201ENST00000619633 179 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 MIR3974-201ENST00000637126 96 ntBASIC0.36□□□□□ -2.35
COL18A1P39060 Y_RNA.372-201ENST00000365599 102 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 RNU6-483P-201ENST00000384088 108 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 RNU6-1145P-201ENST00000384246 107 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 Y_RNA.476-201ENST00000384347 108 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 RNU5A-5P-201ENST00000411054 116 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 ELOCP21-201ENST00000412558 336 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 AL590632.1-201ENST00000424289 371 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 AC244023.1-201ENST00000426884 112 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 MTND3P23-201ENST00000431980 347 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 UBE2V1P7-201ENST00000446395 340 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 HMGN2P26-201ENST00000463169 339 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 AC104692.1-201ENST00000472406 90 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 RNU6-1114P-201ENST00000516022 107 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.35□□□□□ -2.35
COL18A1P39060 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.35□□□□□ -2.35
COL18A1P39060 AC242498.1-201ENST00000604134 111 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.35□□□□□ -2.35
COL18A1P39060 AC243994.1-201ENST00000618627 109 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 ZNF299P-201ENST00000406845 1804 ntBASIC0.35□□□□□ -2.35
COL18A1P39060 Y_RNA.336-201ENST00000365307 109 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 RNU6-1119P-201ENST00000384349 108 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 Y_RNA.533-201ENST00000384596 114 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 MIR520C-201ENST00000385005 87 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.34□□□□□ -2.35
COL18A1P39060 Y_RNA.615-201ENST00000410769 117 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.34□□□□□ -2.35
COL18A1P39060 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.34□□□□□ -2.35
COL18A1P39060 AL137792.2-201ENST00000443484 235 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 SUMO1P2-201ENST00000452524 304 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 RNU6-1281P-201ENST00000516223 105 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 AC100812.1-201ENST00000607622 580 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 Z99129.1-201ENST00000612510 255 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 AL359880.1-201ENST00000621879 266 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.34□□□□□ -2.35
COL18A1P39060 RNU6-136P-201ENST00000384663 107 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 MIR526A1-201ENST00000384897 85 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 MIR136-201ENST00000385207 82 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 RNU1-119P-201ENST00000391122 165 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 AC018865.2-201ENST00000423631 129 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 snoU13.25-201ENST00000458945 104 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.34□□□□□ -2.36
COL18A1P39060 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.34□□□□□ -2.36
COL18A1P39060 CYCTP-201ENST00000504253 315 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 AC018710.1-201ENST00000506509 158 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 SNORD111.1-201ENST00000516421 86 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 AC131055.1-201ENST00000584626 316 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 AP000770.2-201ENST00000623694 100 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 U6.115-201ENST00000636045 103 ntBASIC0.34□□□□□ -2.36
COL18A1P39060 Y_RNA.142-201ENST00000363491 102 ntBASIC0.33□□□□□ -2.36
COL18A1P39060 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
COL18A1P39060 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.33□□□□□ -2.36
COL18A1P39060 RNU6-1310P-201ENST00000384153 107 ntBASIC0.33□□□□□ -2.36
COL18A1P39060 MIR452-201ENST00000385020 85 ntBASIC0.33□□□□□ -2.36
COL18A1P39060 MIR1298-201ENST00000408783 112 ntBASIC0.33□□□□□ -2.36
COL18A1P39060 RNU2-66P-201ENST00000410650 161 ntBASIC0.33□□□□□ -2.36
COL18A1P39060 AC092423.1-201ENST00000430165 186 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms