Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RNU4-40P-201ENST00000364351 143 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 MIR100-201ENST00000385259 80 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 SNORA75.2-201ENST00000391138 150 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 SNORA75.3-201ENST00000391231 150 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 MIR891A-201ENST00000401237 79 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 RNA5SP511-201ENST00000410487 115 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.54□□□□□ -2.32
CPSF4O95639 PIGPP3-201ENST00000425307 415 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.54□□□□□ -2.32
CPSF4O95639 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.54□□□□□ -2.32
CPSF4O95639 SUMO1P2-201ENST00000452524 304 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 RNU7-21P-201ENST00000459430 62 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 RPL17P19-201ENST00000489069 552 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.54□□□□□ -2.32
CPSF4O95639 PDCD5P2-201ENST00000507570 312 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.54□□□□□ -2.32
CPSF4O95639 CYP3A137P-201ENST00000562436 69 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.54□□□□□ -2.32
CPSF4O95639 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.54□□□□□ -2.32
CPSF4O95639 AC120024.3-201ENST00000603167 156 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 PRELID3BP2-201ENST00000605362 201 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 PISRT1.1-201ENST00000616930 107 ntBASIC0.54□□□□□ -2.32
CPSF4O95639 SNORD114-7-201ENST00000362520 77 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 RNU6-833P-201ENST00000363486 107 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 RNU6-1310P-201ENST00000384153 107 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 RNU6-163P-201ENST00000384396 106 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 MIR520E-201ENST00000384867 87 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 MIR200A-201ENST00000384875 90 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 SNORA75.4-201ENST00000391278 119 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 RNU2-64P-201ENST00000411315 191 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AC006461.1-201ENST00000412637 326 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AL354751.2-201ENST00000415471 210 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 RPL23AP50-201ENST00000434149 455 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 ELOCP24-201ENST00000456370 334 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 CYCTP-201ENST00000504253 315 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AC116353.2-201ENST00000505332 712 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AC114811.1-201ENST00000507207 168 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 RNU6-408P-201ENST00000515910 100 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 SNORD111.1-201ENST00000516421 86 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 RNU6-1213P-201ENST00000517075 94 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AC023442.1-201ENST00000531247 422 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AC055872.1-201ENST00000570978 278 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AC005899.2-201ENST00000584353 90 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 MIR3192-201ENST00000584920 77 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.53□□□□□ -2.32
CPSF4O95639 AL391903.3-201ENST00000612158 163 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AC004467.1-201ENST00000615678 330 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AL008636.1-201ENST00000625038 1018 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 AC073869.6-201ENST00000640656 341 ntBASIC0.53□□□□□ -2.32
CPSF4O95639 MIR337-201ENST00000362281 93 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 Y_RNA.6-201ENST00000362350 114 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 SNORD68-201ENST00000363214 84 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 RNU6-961P-201ENST00000363893 105 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 SNORD115-30-201ENST00000364117 82 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 RNU6-99P-201ENST00000364721 107 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 Y_RNA.336-201ENST00000365307 109 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 Y_RNA.361-201ENST00000365515 120 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 MIR942-201ENST00000401111 86 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 AL162725.1-201ENST00000435405 301 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 RPEP5-201ENST00000441137 268 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.52□□□□□ -2.33
CPSF4O95639 AL157398.1-201ENST00000452981 186 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 AC245047.8-201ENST00000456455 284 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 MIR2053-201ENST00000459295 91 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC0.52□□□□□ -2.33
CPSF4O95639 RNU6-1337P-201ENST00000516525 95 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 RNU6-197P-201ENST00000516680 100 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 RNU2-12P-201ENST00000517216 168 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 AC011712.1-201ENST00000588959 234 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 AC060780.3-201ENST00000589464 80 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 AC068790.6-201ENST00000602558 258 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 AC027279.3-201ENST00000625055 122 ntBASIC0.52□□□□□ -2.33
CPSF4O95639 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
CPSF4O95639 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.52□□□□□ -2.33
CPSF4O95639 Y_RNA.72-201ENST00000362894 103 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 SNORD116-13-201ENST00000384408 92 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.51□□□□□ -2.33
CPSF4O95639 RNU4-14P-201ENST00000410858 122 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 Y_RNA.621-201ENST00000411065 96 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.51□□□□□ -2.33
CPSF4O95639 RNU7-90P-201ENST00000459216 62 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.51□□□□□ -2.33
CPSF4O95639 RNU6-120P-201ENST00000516077 103 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 RNU6-358P-201ENST00000516564 75 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 RNU6-307P-201ENST00000516743 106 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 RNU7-30P-201ENST00000516835 62 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 AC090142.3-201ENST00000519012 385 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.51□□□□□ -2.33
CPSF4O95639 AC136443.5-201ENST00000603741 370 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 AC084782.3-201ENST00000612282 578 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.51□□□□□ -2.33
CPSF4O95639 AL591926.4-201ENST00000616895 298 ntBASIC0.51□□□□□ -2.33
CPSF4O95639 RNU6-926P-201ENST00000384075 107 ntBASIC0.5□□□□□ -2.33
CPSF4O95639 MIR608-201ENST00000384820 100 ntBASIC0.5□□□□□ -2.33
CPSF4O95639 MIR1298-201ENST00000408783 112 ntBASIC0.5□□□□□ -2.33
CPSF4O95639 RPS3AP1-201ENST00000413190 320 ntBASIC0.5□□□□□ -2.33
CPSF4O95639 MTND4P28-201ENST00000426217 387 ntBASIC0.5□□□□□ -2.33
CPSF4O95639 MTND1P34-201ENST00000438556 671 ntBASIC0.5□□□□□ -2.33
CPSF4O95639 AC093019.1-201ENST00000443135 252 ntBASIC0.5□□□□□ -2.33
CPSF4O95639 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms