Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.35□□□□□ -2.19
SIX3O95343 AC023442.1-201ENST00000531247 422 ntBASIC1.35□□□□□ -2.19
SIX3O95343 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.35□□□□□ -2.19
SIX3O95343 AL355073.2-201ENST00000612106 557 ntBASIC1.35□□□□□ -2.19
SIX3O95343 MIR520E-201ENST00000384867 87 ntBASIC1.34□□□□□ -2.19
SIX3O95343 Y_RNA.621-201ENST00000411065 96 ntBASIC1.34□□□□□ -2.19
SIX3O95343 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.34□□□□□ -2.19
SIX3O95343 FCF1P4-201ENST00000448326 183 ntBASIC1.34□□□□□ -2.19
SIX3O95343 RNU7-28P-201ENST00000516759 62 ntBASIC1.34□□□□□ -2.19
SIX3O95343 SNORA20.3-201ENST00000516880 132 ntBASIC1.34□□□□□ -2.19
SIX3O95343 AP002004.2-201ENST00000531656 154 ntBASIC1.34□□□□□ -2.19
SIX3O95343 MIR7974-201ENST00000615835 79 ntBASIC1.34□□□□□ -2.19
SIX3O95343 RNA5SP62-201ENST00000363457 110 ntBASIC1.33□□□□□ -2.2
SIX3O95343 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.33□□□□□ -2.2
SIX3O95343 Y_RNA.387-201ENST00000383918 102 ntBASIC1.33□□□□□ -2.2
SIX3O95343 MIR660-201ENST00000385235 97 ntBASIC1.33□□□□□ -2.2
SIX3O95343 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
SIX3O95343 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.33□□□□□ -2.2
SIX3O95343 AC098934.3-201ENST00000430450 190 ntBASIC1.33□□□□□ -2.2
SIX3O95343 HSPE1P13-201ENST00000451143 297 ntBASIC1.33□□□□□ -2.2
SIX3O95343 SNORA70.12-201ENST00000516084 153 ntBASIC1.33□□□□□ -2.2
SIX3O95343 RNU6-922P-201ENST00000516753 99 ntBASIC1.33□□□□□ -2.2
SIX3O95343 RNU6-341P-201ENST00000516973 96 ntBASIC1.33□□□□□ -2.2
SIX3O95343 MIR4421-201ENST00000578133 69 ntBASIC1.33□□□□□ -2.2
SIX3O95343 FAM106DP-201ENST00000586416 501 ntBASIC1.33□□□□□ -2.2
SIX3O95343 AL390123.1-201ENST00000603216 237 ntBASIC1.33□□□□□ -2.2
SIX3O95343 AC004467.1-201ENST00000615678 330 ntBASIC1.33□□□□□ -2.2
SIX3O95343 MIR410-201ENST00000362222 80 ntBASIC1.32□□□□□ -2.2
SIX3O95343 RNU6-324P-201ENST00000363957 106 ntBASIC1.32□□□□□ -2.2
SIX3O95343 RNY3P11-201ENST00000364153 102 ntBASIC1.32□□□□□ -2.2
SIX3O95343 MIR216A-201ENST00000385063 110 ntBASIC1.32□□□□□ -2.2
SIX3O95343 MIR520G-201ENST00000385064 90 ntBASIC1.32□□□□□ -2.2
SIX3O95343 MIR548J-201ENST00000408833 112 ntBASIC1.32□□□□□ -2.2
SIX3O95343 SDAD1P3-201ENST00000427380 333 ntBASIC1.32□□□□□ -2.2
SIX3O95343 AL137792.2-201ENST00000443484 235 ntBASIC1.32□□□□□ -2.2
SIX3O95343 MTCO3P10-201ENST00000455912 772 ntBASIC1.32□□□□□ -2.2
SIX3O95343 RPS29P29-201ENST00000456396 171 ntBASIC1.32□□□□□ -2.2
SIX3O95343 RNU7-12P-201ENST00000516030 62 ntBASIC1.32□□□□□ -2.2
SIX3O95343 RNU7-40P-201ENST00000516397 64 ntBASIC1.32□□□□□ -2.2
SIX3O95343 RAB11AP2-201ENST00000545905 639 ntBASIC1.32□□□□□ -2.2
SIX3O95343 AL160236.1-201ENST00000556317 195 ntBASIC1.32□□□□□ -2.2
SIX3O95343 AC068338.1-201ENST00000565567 176 ntBASIC1.32□□□□□ -2.2
SIX3O95343 AC087588.2-201ENST00000617667 426 ntBASIC1.32□□□□□ -2.2
SIX3O95343 MTND4LP32-201ENST00000636111 270 ntBASIC1.32□□□□□ -2.2
SIX3O95343 MIR1302-1-201ENST00000637932 143 ntBASIC1.32□□□□□ -2.2
SIX3O95343 RNU6-454P-201ENST00000364292 107 ntBASIC1.31□□□□□ -2.2
SIX3O95343 SNORD26-201ENST00000384147 75 ntBASIC1.31□□□□□ -2.2
SIX3O95343 MIR222-201ENST00000384992 110 ntBASIC1.31□□□□□ -2.2
SIX3O95343 SNORD78.2-201ENST00000391076 69 ntBASIC1.31□□□□□ -2.2
SIX3O95343 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.31□□□□□ -2.2
SIX3O95343 AC099799.1-201ENST00000439809 192 ntBASIC1.31□□□□□ -2.2
SIX3O95343 RPL39P38-201ENST00000467018 153 ntBASIC1.31□□□□□ -2.2
SIX3O95343 AL049830.1-201ENST00000468034 425 ntBASIC1.31□□□□□ -2.2
SIX3O95343 RNU6-322P-201ENST00000516010 103 ntBASIC1.31□□□□□ -2.2
SIX3O95343 RNA5SP168-201ENST00000516642 112 ntBASIC1.31□□□□□ -2.2
SIX3O95343 MIR3664-201ENST00000579074 99 ntBASIC1.31□□□□□ -2.2
SIX3O95343 RNU6-199P-201ENST00000362954 107 ntBASIC1.3□□□□□ -2.2
SIX3O95343 Y_RNA.124-201ENST00000363339 93 ntBASIC1.3□□□□□ -2.2
SIX3O95343 MIR758-201ENST00000390227 88 ntBASIC1.3□□□□□ -2.2
SIX3O95343 RNA5SP482-201ENST00000391269 118 ntBASIC1.3□□□□□ -2.2
SIX3O95343 MTCO2P27-201ENST00000420740 428 ntBASIC1.3□□□□□ -2.2
SIX3O95343 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.3□□□□□ -2.2
SIX3O95343 CALM2P4-201ENST00000430810 426 ntBASIC1.3□□□□□ -2.2
SIX3O95343 AC093019.1-201ENST00000443135 252 ntBASIC1.3□□□□□ -2.2
SIX3O95343 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.3□□□□□ -2.2
SIX3O95343 RNU6-947P-201ENST00000516264 106 ntBASIC1.3□□□□□ -2.2
SIX3O95343 RNU6-63P-201ENST00000516690 95 ntBASIC1.3□□□□□ -2.2
SIX3O95343 RNU6-1096P-201ENST00000517089 102 ntBASIC1.3□□□□□ -2.2
SIX3O95343 AC036111.3-201ENST00000526389 112 ntBASIC1.3□□□□□ -2.2
SIX3O95343 AP002001.1-203ENST00000534002 267 ntBASIC1.3□□□□□ -2.2
SIX3O95343 UBE2V2P2-201ENST00000587677 504 ntBASIC1.3□□□□□ -2.2
SIX3O95343 AC005176.2-201ENST00000596933 147 ntBASIC1.3□□□□□ -2.2
SIX3O95343 MIR6078-201ENST00000611069 100 ntBASIC1.3□□□□□ -2.2
SIX3O95343 U2.1-201ENST00000618978 145 ntBASIC1.3□□□□□ -2.2
SIX3O95343 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.3□□□□□ -2.2
SIX3O95343 AC068647.2-201ENST00000637380 353 ntBASIC1.3□□□□□ -2.2
SIX3O95343 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SIX3O95343 SNORA1B-201ENST00000362535 133 ntBASIC1.29□□□□□ -2.2
SIX3O95343 Y_RNA.115-201ENST00000363272 98 ntBASIC1.29□□□□□ -2.2
SIX3O95343 RNU6-505P-201ENST00000384427 107 ntBASIC1.29□□□□□ -2.2
SIX3O95343 AC084781.2-201ENST00000615568 161 ntBASIC1.29□□□□□ -2.2
SIX3O95343 RNA5SP327-201ENST00000362494 101 ntBASIC1.28□□□□□ -2.2
SIX3O95343 RNU6-490P-201ENST00000362985 107 ntBASIC1.28□□□□□ -2.2
SIX3O95343 Y_RNA.474-201ENST00000384341 102 ntBASIC1.28□□□□□ -2.2
SIX3O95343 U8.16-201ENST00000391279 133 ntBASIC1.28□□□□□ -2.2
SIX3O95343 AL451046.2-201ENST00000403074 277 ntBASIC1.28□□□□□ -2.2
SIX3O95343 RNA5SP436-201ENST00000516020 115 ntBASIC1.28□□□□□ -2.2
SIX3O95343 AL513534.2-201ENST00000603836 250 ntBASIC1.28□□□□□ -2.2
SIX3O95343 AL353770.2-201ENST00000620024 78 ntBASIC1.28□□□□□ -2.2
SIX3O95343 AC005592.1-201ENST00000566527 1640 ntBASIC1.27□□□□□ -2.21
SIX3O95343 RNA5SP257-201ENST00000363023 116 ntBASIC1.27□□□□□ -2.21
SIX3O95343 SNORA72.1-201ENST00000363485 129 ntBASIC1.27□□□□□ -2.21
SIX3O95343 RNU6-961P-201ENST00000363893 105 ntBASIC1.27□□□□□ -2.21
SIX3O95343 Y_RNA.243-201ENST00000364481 109 ntBASIC1.27□□□□□ -2.21
SIX3O95343 Y_RNA.428-201ENST00000384078 102 ntBASIC1.27□□□□□ -2.21
SIX3O95343 MIR193B-201ENST00000384907 83 ntBASIC1.27□□□□□ -2.21
SIX3O95343 RNY4P36-201ENST00000391116 96 ntBASIC1.27□□□□□ -2.21
SIX3O95343 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.27□□□□□ -2.21
SIX3O95343 MRPS18CP6-201ENST00000423587 223 ntBASIC1.27□□□□□ -2.21
SIX3O95343 AC096644.2-201ENST00000429278 159 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms