Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC134698.4-201ENST00000523451 826 ntBASIC0.31□□□□□ -2.36
USH1CQ9Y6N9 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.31□□□□□ -2.36
USH1CQ9Y6N9 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.31□□□□□ -2.36
USH1CQ9Y6N9 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.31□□□□□ -2.36
USH1CQ9Y6N9 Z69908.1-201ENST00000622603 247 ntBASIC0.31□□□□□ -2.36
USH1CQ9Y6N9 AC027279.3-201ENST00000625055 122 ntBASIC0.31□□□□□ -2.36
USH1CQ9Y6N9 AC099654.12-201ENST00000639868 649 ntBASIC0.31□□□□□ -2.36
USH1CQ9Y6N9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 MIR410-201ENST00000362222 80 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 RNU6-1297P-201ENST00000384415 104 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 RNA5SP511-201ENST00000410487 115 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 RNU6-994P-201ENST00000410507 111 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 PIGPP3-201ENST00000425307 415 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 CYCTP-201ENST00000504253 315 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 RNA5SP20-201ENST00000515976 84 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 Y_RNA.683-201ENST00000516508 93 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 MIR3684-201ENST00000579779 74 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 AC119751.7-201ENST00000600494 245 ntBASIC0.3□□□□□ -2.36
USH1CQ9Y6N9 MIR330-201ENST00000362196 94 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 RNU6-596P-201ENST00000365395 98 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 Y_RNA.359-201ENST00000365498 102 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 RNU6-1264P-201ENST00000383891 107 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 DEFB108C-201ENST00000400154 252 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 MTND2P9-201ENST00000422293 931 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 MTND3P23-201ENST00000431980 347 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 RNU6-1114P-201ENST00000516022 107 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 RN7SKP12-201ENST00000516275 143 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 Y_RNA.693-201ENST00000516641 110 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 AC125232.2-201ENST00000592457 143 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 AC120024.3-201ENST00000603167 156 ntBASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
USH1CQ9Y6N9 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 MTND5P16-201ENST00000460269 1703 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 MTND5P26-201ENST00000426018 1752 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 U8.5-201ENST00000364528 136 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 Y_RNA.361-201ENST00000365515 120 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 MIR452-201ENST00000385020 85 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 RNU6-908P-201ENST00000410160 94 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 Y_RNA.615-201ENST00000410769 117 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 MRPS18CP6-201ENST00000423587 223 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 ACA59.1-201ENST00000515966 143 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 RNU6-1278P-201ENST00000516130 107 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AC023442.1-201ENST00000531247 422 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 ZNF519P2-201ENST00000557032 169 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 MIR3672-201ENST00000584290 82 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AC010525.2-201ENST00000590920 195 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 MIR8087-201ENST00000612745 78 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AL357075.2-201ENST00000614906 189 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AL359880.1-201ENST00000621879 266 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AC091925.1-201ENST00000623204 462 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 U6.115-201ENST00000636045 103 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 AC100810.6-201ENST00000638068 285 ntBASIC0.28□□□□□ -2.36
USH1CQ9Y6N9 RNU6-1085P-201ENST00000363576 107 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNA5SP457-201ENST00000363657 124 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNU6-595P-201ENST00000363944 107 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 Y_RNA.212-201ENST00000364177 102 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 Y_RNA.256-201ENST00000364594 104 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNY1P8-201ENST00000383970 114 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNU6-1145P-201ENST00000384246 107 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNU6-1119P-201ENST00000384349 108 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 Y_RNA.533-201ENST00000384596 114 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 MIR520C-201ENST00000385005 87 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 MIR329-1-201ENST00000385028 80 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 MIR520G-201ENST00000385064 90 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 MTCYBP4-201ENST00000401524 249 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 MIR1302-7-201ENST00000408841 72 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 MTATP6P13-201ENST00000438531 667 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 AL392103.1-201ENST00000447000 198 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 SNORA68.3-201ENST00000515906 83 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNU7-175P-201ENST00000515915 61 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNU7-41P-201ENST00000515917 61 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNU6-256P-201ENST00000516747 97 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 SNORA74.3-201ENST00000517108 154 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 AC036111.3-201ENST00000526389 112 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 MIR4762-201ENST00000585261 75 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 AC124303.1-201ENST00000605703 360 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 AC092954.2-201ENST00000609103 430 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 MIR6863-201ENST00000636112 90 ntBASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.27□□□□□ -2.37
USH1CQ9Y6N9 RNU6-222P-201ENST00000362438 107 ntBASIC0.26□□□□□ -2.37
USH1CQ9Y6N9 SNORD114-7-201ENST00000362520 77 ntBASIC0.26□□□□□ -2.37
USH1CQ9Y6N9 Y_RNA.77-201ENST00000362962 107 ntBASIC0.26□□□□□ -2.37
USH1CQ9Y6N9 RNU6-1252P-201ENST00000363054 104 ntBASIC0.26□□□□□ -2.37
USH1CQ9Y6N9 RNU6-454P-201ENST00000364292 107 ntBASIC0.26□□□□□ -2.37
USH1CQ9Y6N9 AC117470.1-201ENST00000381974 330 ntBASIC0.26□□□□□ -2.37
USH1CQ9Y6N9 Y_RNA.405-201ENST00000383979 100 ntBASIC0.26□□□□□ -2.37
USH1CQ9Y6N9 Y_RNA.451-201ENST00000384200 100 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms