Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AL162424.1-201ENST00000602325 221 ntBASIC1.44□□□□□ -2.18
PCDHGA1Q9Y5H4 U2.1-201ENST00000618978 145 ntBASIC1.44□□□□□ -2.18
PCDHGA1Q9Y5H4 AC112487.2-201ENST00000637950 304 ntBASIC1.44□□□□□ -2.18
PCDHGA1Q9Y5H4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
PCDHGA1Q9Y5H4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 SNORA27.1-201ENST00000362604 124 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU1-22P-201ENST00000363334 158 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 Y_RNA.146-201ENST00000363549 102 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 Y_RNA.243-201ENST00000364481 109 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 MRPL42P3-201ENST00000401492 326 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 AF228730.4-201ENST00000421457 183 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 AC010154.1-201ENST00000425857 269 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 MTATP6P23-201ENST00000440153 476 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 FCF1P4-201ENST00000448326 183 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU7-34P-201ENST00000459394 64 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 MTND3P22-201ENST00000510932 243 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 AC097462.1-201ENST00000514125 324 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 RNA5SP20-201ENST00000515976 84 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 AL929325.1-201ENST00000603096 117 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 LARP7P1-201ENST00000605576 316 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 MIR8054-201ENST00000620877 86 ntBASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.43□□□□□ -2.18
PCDHGA1Q9Y5H4 AC018630.2-201ENST00000534866 2403 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU6-961P-201ENST00000363893 105 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU6-42P-201ENST00000384165 107 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU6-440P-201ENST00000390882 105 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 MRPL35P1-201ENST00000404272 572 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 AC245047.3-201ENST00000429428 127 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 PGBD4P5-201ENST00000445958 426 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 SUMO1P2-201ENST00000452524 304 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 RPL30P7-201ENST00000479312 323 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU6-1012P-201ENST00000516606 109 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU7-172P-201ENST00000517125 64 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 AL390123.1-201ENST00000603216 237 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 MIR6078-201ENST00000611069 100 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 AC004467.1-201ENST00000615678 330 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 AC091925.1-201ENST00000623204 462 ntBASIC1.42□□□□□ -2.18
PCDHGA1Q9Y5H4 AP000648.3-201ENST00000623539 4507 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 SNORD114-7-201ENST00000362520 77 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 Y_RNA.58-201ENST00000362807 102 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 Y_RNA.154-201ENST00000363624 102 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 RNY3P1-201ENST00000365085 102 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 RNY3-201ENST00000365484 102 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU6-926P-201ENST00000384075 107 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 Y_RNA.428-201ENST00000384078 102 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU6-1031P-201ENST00000384773 107 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 AC018865.2-201ENST00000423631 129 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 SDAD1P3-201ENST00000427380 333 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 AL354695.1-201ENST00000427935 228 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 CHEK2P4-201ENST00000450340 246 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 SNORD116.3-201ENST00000517176 78 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 AC073413.2-201ENST00000604332 360 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 AC040896.1-201ENST00000613819 479 ntBASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.41□□□□□ -2.18
PCDHGA1Q9Y5H4 RNU6-1115P-201ENST00000362490 106 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 Y_RNA.27-201ENST00000362540 103 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 RNU4-73P-201ENST00000363164 141 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 RNU6-407P-201ENST00000365280 104 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 MT-TD-201ENST00000387419 68 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 SNORD78.2-201ENST00000391076 69 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 MIR873-201ENST00000401120 77 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 AC096644.2-201ENST00000429278 159 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 AL137792.2-201ENST00000443484 235 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 RNA5SP220-201ENST00000516298 104 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 RNU2-12P-201ENST00000517216 168 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 RPL21P9-201ENST00000556149 474 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 VN1R91P-201ENST00000594377 169 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 AC021506.2-201ENST00000612354 169 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 AL078604.3-201ENST00000615580 211 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 MIR6079-201ENST00000635807 62 ntBASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.4□□□□□ -2.19
PCDHGA1Q9Y5H4 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 U8.1-201ENST00000362843 134 ntBASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 MIR562-201ENST00000384894 95 ntBASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 MIR513A1-201ENST00000385138 129 ntBASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 MIR628-201ENST00000385229 95 ntBASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 AC055872.1-201ENST00000570978 278 ntBASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 MIR4795-201ENST00000584182 89 ntBASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 AC091178.2-201ENST00000584401 117 ntBASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 AC136443.5-201ENST00000603741 370 ntBASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 Y_RNA.804-201ENST00000615262 101 ntBASIC1.39□□□□□ -2.19
PCDHGA1Q9Y5H4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
PCDHGA1Q9Y5H4 RNU4-79P-201ENST00000362764 141 ntBASIC1.38□□□□□ -2.19
PCDHGA1Q9Y5H4 Y_RNA.252-201ENST00000364556 101 ntBASIC1.38□□□□□ -2.19
PCDHGA1Q9Y5H4 Y_RNA.361-201ENST00000365515 120 ntBASIC1.38□□□□□ -2.19
PCDHGA1Q9Y5H4 RNU6-708P-201ENST00000384217 107 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 192.2 ms