Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 AL353770.2-201ENST00000620024 78 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 MIR8054-201ENST00000620877 86 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.80-201ENST00000362996 102 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.243-201ENST00000364481 109 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.252-201ENST00000364556 101 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 SNORD1A-201ENST00000364968 72 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.485-201ENST00000384395 102 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.509-201ENST00000384506 99 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 MIR628-201ENST00000385229 95 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 SNORD78.2-201ENST00000391076 69 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 COX6CP10-201ENST00000416832 224 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 AC245047.3-201ENST00000429428 127 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 FCF1P4-201ENST00000448326 183 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 RNU1-123P-201ENST00000458950 160 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 RNU1-98P-201ENST00000458992 160 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 RNU7-34P-201ENST00000459394 64 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 RNA5SP61-201ENST00000516453 100 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 RNU6-911P-201ENST00000516523 104 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 RNU2-12P-201ENST00000517216 168 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 MIR4659A-201ENST00000580269 81 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 VN1R91P-201ENST00000594377 169 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 AL390123.1-201ENST00000603216 237 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 AL133255.1-201ENST00000606374 441 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 SNORD58B-201ENST00000607313 66 ntBASIC1.45□□□□□ -2.18
RPF1Q9H9Y2 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.27-201ENST00000362540 103 ntBASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 MTCO3P19-201ENST00000415864 321 ntBASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 AL137792.2-201ENST00000443484 235 ntBASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 RNU7-172P-201ENST00000517125 64 ntBASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 MIR5188-201ENST00000583467 113 ntBASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 C8orf59P2-201ENST00000603441 271 ntBASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 AP001485.1-201ENST00000604799 199 ntBASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 AC021506.2-201ENST00000612354 169 ntBASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 AC018630.2-201ENST00000534866 2403 ntBASIC1.44□□□□□ -2.18
RPF1Q9H9Y2 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 RNU6-626P-201ENST00000363354 107 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 SNORD115-30-201ENST00000364117 82 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 RNU6-867P-201ENST00000364956 107 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 RNU6-20P-201ENST00000384106 107 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 RNU6-1310P-201ENST00000384153 107 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 RNU6-440P-201ENST00000390882 105 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 MRPL42P3-201ENST00000401492 326 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 AC079140.2-201ENST00000506193 142 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 AC019176.1-201ENST00000518519 225 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 AC015688.6-201ENST00000577737 104 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 MIR3684-201ENST00000579779 74 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 AC240442.1-201ENST00000616055 283 ntBASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.43□□□□□ -2.18
RPF1Q9H9Y2 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.197-201ENST00000364004 102 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 RNU5E-4P-201ENST00000364931 120 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 RNU6-117P-201ENST00000365415 107 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.361-201ENST00000365515 120 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 RNY1P14-201ENST00000384426 108 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 RNU6-1031P-201ENST00000384773 107 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 MIR873-201ENST00000401120 77 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 MRPL35P1-201ENST00000404272 572 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 RNU6-1199P-201ENST00000411249 104 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 AC027119.1-201ENST00000440877 241 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 AC091021.1-201ENST00000468051 388 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 RNU6-976P-201ENST00000516086 111 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 RNU6-63P-201ENST00000516690 95 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 AL080274.1-201ENST00000605565 220 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 MIR6078-201ENST00000611069 100 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 MIR8070-201ENST00000616510 88 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 AL121890.5-201ENST00000620848 304 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 AL008636.1-201ENST00000625038 1018 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 MIR6079-201ENST00000635807 62 ntBASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.42□□□□□ -2.18
RPF1Q9H9Y2 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.226-201ENST00000364337 114 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 RNU6-392P-201ENST00000364926 101 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 MIR758-201ENST00000390227 88 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 AC004223.1-201ENST00000479840 271 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 AC091178.2-201ENST00000584401 117 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 AC005176.2-201ENST00000596933 147 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 AL050343.2-201ENST00000607338 280 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 AC007485.1-201ENST00000616755 206 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 uc_338.22-201ENST00000622722 187 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 AL606534.2-204ENST00000635008 178 ntBASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
RPF1Q9H9Y2 MIR369-201ENST00000362155 70 ntBASIC1.4□□□□□ -2.19
RPF1Q9H9Y2 Y_RNA.39-201ENST00000362620 98 ntBASIC1.4□□□□□ -2.19
RPF1Q9H9Y2 SNORA25.9-201ENST00000365087 128 ntBASIC1.4□□□□□ -2.19
RPF1Q9H9Y2 RNU1-115P-201ENST00000365329 160 ntBASIC1.4□□□□□ -2.19
RPF1Q9H9Y2 SNORA40.6-201ENST00000391153 128 ntBASIC1.4□□□□□ -2.19
RPF1Q9H9Y2 RNU2-54P-201ENST00000410299 190 ntBASIC1.4□□□□□ -2.19
RPF1Q9H9Y2 MTND1P14-201ENST00000427400 950 ntBASIC1.4□□□□□ -2.19
RPF1Q9H9Y2 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.4□□□□□ -2.19
RPF1Q9H9Y2 Y_RNA.112-201ENST00000363250 102 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 175.1 ms