Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 MIR8054-201ENST00000620877 86 ntBASIC1.53□□□□□ -2.16
LHX1P48742 uc_338.22-201ENST00000622722 187 ntBASIC1.53□□□□□ -2.16
LHX1P48742 AC095038.3-201ENST00000634439 195 ntBASIC1.53□□□□□ -2.16
LHX1P48742 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
LHX1P48742 ICE2P2-201ENST00000483823 2787 ntBASIC1.52□□□□□ -2.17
LHX1P48742 Y_RNA.101-201ENST00000363154 102 ntBASIC1.52□□□□□ -2.17
LHX1P48742 Y_RNA.124-201ENST00000363339 93 ntBASIC1.52□□□□□ -2.17
LHX1P48742 RNU6-338P-201ENST00000383888 105 ntBASIC1.52□□□□□ -2.17
LHX1P48742 Y_RNA.395-201ENST00000383945 109 ntBASIC1.52□□□□□ -2.17
LHX1P48742 RNU6-203P-201ENST00000384038 104 ntBASIC1.52□□□□□ -2.17
LHX1P48742 RNU6-376P-201ENST00000384731 106 ntBASIC1.52□□□□□ -2.17
LHX1P48742 RNU2-54P-201ENST00000410299 190 ntBASIC1.52□□□□□ -2.17
LHX1P48742 AL137792.2-201ENST00000443484 235 ntBASIC1.52□□□□□ -2.17
LHX1P48742 AC009474.2-201ENST00000451383 136 ntBASIC1.52□□□□□ -2.17
LHX1P48742 SNORA31.10-201ENST00000516482 106 ntBASIC1.52□□□□□ -2.17
LHX1P48742 RNU1-92P-201ENST00000517017 135 ntBASIC1.52□□□□□ -2.17
LHX1P48742 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.52□□□□□ -2.17
LHX1P48742 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.52□□□□□ -2.17
LHX1P48742 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.52□□□□□ -2.17
LHX1P48742 MIR8063-201ENST00000621930 81 ntBASIC1.52□□□□□ -2.17
LHX1P48742 AC090574.1-201ENST00000623186 233 ntBASIC1.52□□□□□ -2.17
LHX1P48742 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.52□□□□□ -2.17
LHX1P48742 MIR6079-201ENST00000635807 62 ntBASIC1.52□□□□□ -2.17
LHX1P48742 SNORD114-7-201ENST00000362520 77 ntBASIC1.51□□□□□ -2.17
LHX1P48742 Y_RNA.61-201ENST00000362835 102 ntBASIC1.51□□□□□ -2.17
LHX1P48742 Y_RNA.80-201ENST00000362996 102 ntBASIC1.51□□□□□ -2.17
LHX1P48742 SNORD115-30-201ENST00000364117 82 ntBASIC1.51□□□□□ -2.17
LHX1P48742 Y_RNA.230-201ENST00000364348 109 ntBASIC1.51□□□□□ -2.17
LHX1P48742 SNORD42.2-201ENST00000365570 69 ntBASIC1.51□□□□□ -2.17
LHX1P48742 Y_RNA.460-201ENST00000384255 102 ntBASIC1.51□□□□□ -2.17
LHX1P48742 Y_RNA.485-201ENST00000384395 102 ntBASIC1.51□□□□□ -2.17
LHX1P48742 Y_RNA.526-201ENST00000384572 110 ntBASIC1.51□□□□□ -2.17
LHX1P48742 RNU6-1031P-201ENST00000384773 107 ntBASIC1.51□□□□□ -2.17
LHX1P48742 MIR320A-201ENST00000385302 82 ntBASIC1.51□□□□□ -2.17
LHX1P48742 RNU6-440P-201ENST00000390882 105 ntBASIC1.51□□□□□ -2.17
LHX1P48742 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.51□□□□□ -2.17
LHX1P48742 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.51□□□□□ -2.17
LHX1P48742 SNORA70.12-201ENST00000516084 153 ntBASIC1.51□□□□□ -2.17
LHX1P48742 MIR4498-201ENST00000577599 66 ntBASIC1.51□□□□□ -2.17
LHX1P48742 Y_RNA.772-201ENST00000606692 102 ntBASIC1.51□□□□□ -2.17
LHX1P48742 AC007485.1-201ENST00000616755 206 ntBASIC1.51□□□□□ -2.17
LHX1P48742 AL160413.1-201ENST00000622780 310 ntBASIC1.51□□□□□ -2.17
LHX1P48742 AC127459.3-201ENST00000624328 466 ntBASIC1.51□□□□□ -2.17
LHX1P48742 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.51□□□□□ -2.17
LHX1P48742 Y_RNA.813-201ENST00000364639 102 ntBASIC1.5□□□□□ -2.17
LHX1P48742 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.5□□□□□ -2.17
LHX1P48742 Y_RNA.445-201ENST00000384168 102 ntBASIC1.5□□□□□ -2.17
LHX1P48742 AL161935.2-201ENST00000414627 60 ntBASIC1.5□□□□□ -2.17
LHX1P48742 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.5□□□□□ -2.17
LHX1P48742 MTND1P14-201ENST00000427400 950 ntBASIC1.5□□□□□ -2.17
LHX1P48742 Y_RNA.639-201ENST00000458981 102 ntBASIC1.5□□□□□ -2.17
LHX1P48742 RNU6-155P-201ENST00000516347 100 ntBASIC1.5□□□□□ -2.17
LHX1P48742 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.5□□□□□ -2.17
LHX1P48742 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.5□□□□□ -2.17
LHX1P48742 MIR4421-201ENST00000578133 69 ntBASIC1.5□□□□□ -2.17
LHX1P48742 MIR4285-201ENST00000581001 85 ntBASIC1.5□□□□□ -2.17
LHX1P48742 AL121655.1-201ENST00000605811 308 ntBASIC1.5□□□□□ -2.17
LHX1P48742 AC010205.1-201ENST00000616668 449 ntBASIC1.5□□□□□ -2.17
LHX1P48742 MIR126-201ENST00000362291 85 ntBASIC1.49□□□□□ -2.17
LHX1P48742 SNORA7.1-201ENST00000363750 139 ntBASIC1.49□□□□□ -2.17
LHX1P48742 RNU6-324P-201ENST00000363957 106 ntBASIC1.49□□□□□ -2.17
LHX1P48742 Y_RNA.361-201ENST00000365515 120 ntBASIC1.49□□□□□ -2.17
LHX1P48742 Y_RNA.446-201ENST00000384178 104 ntBASIC1.49□□□□□ -2.17
LHX1P48742 MIR194-1-201ENST00000384892 85 ntBASIC1.49□□□□□ -2.17
LHX1P48742 MIR562-201ENST00000384894 95 ntBASIC1.49□□□□□ -2.17
LHX1P48742 AL031003.1-201ENST00000404229 172 ntBASIC1.49□□□□□ -2.17
LHX1P48742 AL034345.1-201ENST00000407768 123 ntBASIC1.49□□□□□ -2.17
LHX1P48742 AC004965.1-201ENST00000413033 213 ntBASIC1.49□□□□□ -2.17
LHX1P48742 MCFD2P1-201ENST00000417812 300 ntBASIC1.49□□□□□ -2.17
LHX1P48742 AC091021.1-201ENST00000468051 388 ntBASIC1.49□□□□□ -2.17
LHX1P48742 AC099513.1-201ENST00000490423 301 ntBASIC1.49□□□□□ -2.17
LHX1P48742 RNU6-475P-201ENST00000516073 104 ntBASIC1.49□□□□□ -2.17
LHX1P48742 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
LHX1P48742 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.49□□□□□ -2.17
LHX1P48742 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.49□□□□□ -2.17
LHX1P48742 AL390123.1-201ENST00000603216 237 ntBASIC1.49□□□□□ -2.17
LHX1P48742 AC021506.2-201ENST00000612354 169 ntBASIC1.49□□□□□ -2.17
LHX1P48742 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.49□□□□□ -2.17
LHX1P48742 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
LHX1P48742 Y_RNA.267-201ENST00000364679 109 ntBASIC1.48□□□□□ -2.17
LHX1P48742 Y_RNA.338-201ENST00000365320 114 ntBASIC1.48□□□□□ -2.17
LHX1P48742 Y_RNA.458-201ENST00000384240 102 ntBASIC1.48□□□□□ -2.17
LHX1P48742 RNU6-505P-201ENST00000384427 107 ntBASIC1.48□□□□□ -2.17
LHX1P48742 Y_RNA.535-201ENST00000384612 99 ntBASIC1.48□□□□□ -2.17
LHX1P48742 RNU6-308P-201ENST00000390957 107 ntBASIC1.48□□□□□ -2.17
LHX1P48742 RPL23AP36-201ENST00000413895 458 ntBASIC1.48□□□□□ -2.17
LHX1P48742 AL163540.1-201ENST00000485382 386 ntBASIC1.48□□□□□ -2.17
LHX1P48742 AC093852.1-201ENST00000503587 266 ntBASIC1.48□□□□□ -2.17
LHX1P48742 AC108729.3-201ENST00000513484 108 ntBASIC1.48□□□□□ -2.17
LHX1P48742 RNU6-970P-201ENST00000516312 107 ntBASIC1.48□□□□□ -2.17
LHX1P48742 RN7SKP295-201ENST00000517264 153 ntBASIC1.48□□□□□ -2.17
LHX1P48742 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.48□□□□□ -2.17
LHX1P48742 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.48□□□□□ -2.17
LHX1P48742 MIR4422-201ENST00000581938 83 ntBASIC1.48□□□□□ -2.17
LHX1P48742 AL162424.1-201ENST00000602325 221 ntBASIC1.48□□□□□ -2.17
LHX1P48742 AL021879.1-201ENST00000611756 288 ntBASIC1.48□□□□□ -2.17
LHX1P48742 AC005592.1-201ENST00000566527 1640 ntBASIC1.48□□□□□ -2.17
LHX1P48742 AC091812.1-201ENST00000432235 1948 ntBASIC1.47□□□□□ -2.17
LHX1P48742 RNU6-1123P-201ENST00000362347 106 ntBASIC1.47□□□□□ -2.17
LHX1P48742 RNU4-50P-201ENST00000364361 141 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 465.6 ms