Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC018448.1-201ENST00000552843 316 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 AC008521.1-201ENST00000587471 187 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC-1.13□□□□□ -2.59
CUX1P39880 EXOSC3P1-201ENST00000448649 500 ntBASIC-1.14□□□□□ -2.59
CUX1P39880 RNU6-274P-201ENST00000459566 107 ntBASIC-1.14□□□□□ -2.59
CUX1P39880 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC-1.14□□□□□ -2.59
CUX1P39880 AC117522.1-201ENST00000509821 380 ntBASIC-1.14□□□□□ -2.59
CUX1P39880 AC010486.3-201ENST00000511602 785 ntBASIC-1.14□□□□□ -2.59
CUX1P39880 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC-1.14□□□□□ -2.59
CUX1P39880 uc_338.4-201ENST00000616635 176 ntBASIC-1.14□□□□□ -2.59
CUX1P39880 AC134878.1-201ENST00000619901 243 ntBASIC-1.14□□□□□ -2.59
CUX1P39880 AC099786.3-201ENST00000565735 1410 ntBASIC-1.14□□□□□ -2.59
CUX1P39880 RNU6-125P-201ENST00000384505 107 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 MIR15B-201ENST00000385045 98 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.15□□□□□ -2.59
CUX1P39880 MCFD2P1-201ENST00000417812 300 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 AL117339.3-201ENST00000418733 162 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 MTATP6P26-201ENST00000445926 662 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 PRDX4P1-201ENST00000507189 574 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 RN7SKP19-201ENST00000516016 252 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 RNU6-504P-201ENST00000516568 104 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 RNU6-344P-201ENST00000516635 111 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 RNA5SP66-201ENST00000517178 101 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC-1.15□□□□□ -2.59
CUX1P39880 MIR5708-201ENST00000579723 85 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-1.15□□□□□ -2.59
CUX1P39880 uc_338.19-201ENST00000616808 99 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 AC078880.5-201ENST00000617845 421 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 AP002782.1-201ENST00000623107 614 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 SNORA43.4-201ENST00000629559 138 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-1.15□□□□□ -2.59
CUX1P39880 SNORD28-201ENST00000384706 75 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 ZNF736P8Y-201ENST00000451913 669 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 RNU7-185P-201ENST00000459215 60 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.15□□□□□ -2.59
CUX1P39880 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.15□□□□□ -2.59
CUX1P39880 MIR3115-201ENST00000577915 68 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 MIR4677-201ENST00000584153 80 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 AC069545.1-201ENST00000605671 358 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 AC006435.5-201ENST00000624486 112 ntBASIC-1.15□□□□□ -2.59
CUX1P39880 MTND4P9-201ENST00000507819 1346 ntBASIC-1.16□□□□□ -2.59
CUX1P39880 RNU5A-6P-201ENST00000384136 116 ntBASIC-1.16□□□□□ -2.6
CUX1P39880 RNU6-24P-201ENST00000384440 107 ntBASIC-1.16□□□□□ -2.6
CUX1P39880 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC-1.16□□□□□ -2.6
CUX1P39880 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC-1.16□□□□□ -2.6
CUX1P39880 AC010493.1-201ENST00000513479 292 ntBASIC-1.16□□□□□ -2.6
CUX1P39880 RNU6-135P-201ENST00000516769 101 ntBASIC-1.16□□□□□ -2.6
CUX1P39880 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC-1.16□□□□□ -2.6
CUX1P39880 AP001836.1-201ENST00000604675 523 ntBASIC-1.16□□□□□ -2.6
CUX1P39880 AC010608.3-201ENST00000625048 527 ntBASIC-1.16□□□□□ -2.6
CUX1P39880 MIR16-2-201ENST00000362117 81 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 RNU6-1266P-201ENST00000362794 105 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 RNU4-16P-201ENST00000364737 141 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 MIR215-201ENST00000384858 110 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC-1.17□□□□□ -2.6
CUX1P39880 MTCO3P19-201ENST00000415864 321 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 AC092447.3-201ENST00000426027 686 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC-1.17□□□□□ -2.6
CUX1P39880 RNU7-172P-201ENST00000517125 64 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 AC099785.1-201ENST00000605697 437 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 AP001330.5-201ENST00000607176 411 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 AC023158.2-201ENST00000614876 543 ntBASIC-1.17□□□□□ -2.6
CUX1P39880 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.18□□□□□ -2.6
CUX1P39880 Y_RNA.148-201ENST00000363557 117 ntBASIC-1.18□□□□□ -2.6
CUX1P39880 Y_RNA.293-201ENST00000364908 93 ntBASIC-1.18□□□□□ -2.6
CUX1P39880 RNU6-116P-201ENST00000384042 109 ntBASIC-1.18□□□□□ -2.6
CUX1P39880 EEF1A1P40-201ENST00000412883 573 ntBASIC-1.18□□□□□ -2.6
CUX1P39880 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC-1.18□□□□□ -2.6
CUX1P39880 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC-1.18□□□□□ -2.6
CUX1P39880 AC012409.4-201ENST00000612923 249 ntBASIC-1.18□□□□□ -2.6
CUX1P39880 AC016597.2-201ENST00000613256 341 ntBASIC-1.18□□□□□ -2.6
CUX1P39880 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC-1.19□□□□□ -2.6
CUX1P39880 SNORD115-2-201ENST00000362842 82 ntBASIC-1.19□□□□□ -2.6
CUX1P39880 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.19□□□□□ -2.6
CUX1P39880 RNU2-39P-201ENST00000410604 198 ntBASIC-1.19□□□□□ -2.6
CUX1P39880 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC-1.19□□□□□ -2.6
CUX1P39880 AC108747.1-201ENST00000609508 535 ntBASIC-1.19□□□□□ -2.6
CUX1P39880 AC091948.2-201ENST00000636510 279 ntBASIC-1.19□□□□□ -2.6
CUX1P39880 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-1.19□□□□□ -2.6
CUX1P39880 RNY4P27-201ENST00000363341 96 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 MIR204-201ENST00000385200 110 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 MIR320B2-201ENST00000408479 138 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC-1.2□□□□□ -2.6
CUX1P39880 TRIM60P10Y-201ENST00000425589 751 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC-1.2□□□□□ -2.6
CUX1P39880 MTND1P32-201ENST00000433043 938 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 AC097462.1-201ENST00000514125 324 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 AC092574.1-201ENST00000609771 420 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 AC006441.5-201ENST00000612680 209 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-1.2□□□□□ -2.6
CUX1P39880 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 TUG1_4.1-201ENST00000619464 181 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 RNU5B-2P-201ENST00000363036 113 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 SNORD68-201ENST00000363214 84 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 Y_RNA.174-201ENST00000363781 105 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 PCMTD1P2-201ENST00000565017 355 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 AC072039.2-201ENST00000608883 439 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 AC105081.1-201ENST00000617727 106 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 AC084368.1-201ENST00000620935 65 ntBASIC-1.2□□□□□ -2.6
CUX1P39880 AC244669.1-204ENST00000621564 178 ntBASIC-1.2□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 151.1 ms