Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 RNU1-98P-201ENST00000458992 160 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 RPL30P7-201ENST00000479312 323 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 Y_RNA.661-201ENST00000516003 99 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 RNU6-507P-201ENST00000516045 100 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 RNU6-976P-201ENST00000516086 111 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 RAB11AP2-201ENST00000545905 639 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 AL161670.1-201ENST00000554348 137 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 AC138305.3-201ENST00000624988 240 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 AL161722.3-201ENST00000605789 2983 ntBASIC1.54□□□□□ -2.16
HOXD13P35453 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.53□□□□□ -2.16
HOXD13P35453 SNORD115-30-201ENST00000364117 82 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.53□□□□□ -2.16
HOXD13P35453 RNU6-20P-201ENST00000384106 107 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 RNY3P14-201ENST00000384309 102 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 AC108667.1-201ENST00000428618 249 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 HSPE1P13-201ENST00000451143 297 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 AC233266.1-201ENST00000454518 96 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 RPS29P23-201ENST00000458635 123 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 MTND3P22-201ENST00000510932 243 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 AL117351.2-201ENST00000513571 157 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 Y_RNA.675-201ENST00000516389 149 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 MIR4524B-201ENST00000581569 115 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 AC091178.2-201ENST00000584401 117 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXD13P35453 RPS29P30-201ENST00000600975 111 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 AC242852.1-201ENST00000612151 96 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 AL353997.5-201ENST00000618886 171 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 AC244015.1-201ENST00000622301 99 ntBASIC1.53□□□□□ -2.16
HOXD13P35453 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
HOXD13P35453 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
HOXD13P35453 Y_RNA.124-201ENST00000363339 93 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 RNU6-324P-201ENST00000363957 106 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 RNU4-76P-201ENST00000364509 141 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 RNU1-115P-201ENST00000365329 160 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 RNU6-117P-201ENST00000365415 107 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 RNU6-505P-201ENST00000384427 107 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 Y_RNA.526-201ENST00000384572 110 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.52□□□□□ -2.17
HOXD13P35453 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.52□□□□□ -2.17
HOXD13P35453 AL049830.1-201ENST00000468034 425 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.52□□□□□ -2.17
HOXD13P35453 Y_RNA.804-201ENST00000615262 101 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 AC240442.1-201ENST00000616055 283 ntBASIC1.52□□□□□ -2.17
HOXD13P35453 ZNF72P-201ENST00000425869 1908 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 Y_RNA.252-201ENST00000364556 101 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 Y_RNA.315-201ENST00000365117 102 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 Y_RNA.361-201ENST00000365515 120 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 AL031003.1-201ENST00000404229 172 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 RNU5A-5P-201ENST00000411054 116 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 AC022028.1-201ENST00000412054 408 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 AL390729.2-201ENST00000416137 156 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 RPL39P38-201ENST00000467018 153 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 RNU6-155P-201ENST00000516347 100 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 RNU6-1291P-201ENST00000516591 104 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 RNU6-1096P-201ENST00000517089 102 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 AC093027.1-201ENST00000546698 429 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 AC068338.1-201ENST00000565567 176 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 Y_RNA.772-201ENST00000606692 102 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 AC011476.5-201ENST00000615594 130 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 MIR4272-201ENST00000635924 64 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 U6.92-201ENST00000636464 89 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 AC112487.2-201ENST00000637950 304 ntBASIC1.51□□□□□ -2.17
HOXD13P35453 RNU6-1115P-201ENST00000362490 106 ntBASIC1.5□□□□□ -2.17
HOXD13P35453 SNORA1B-201ENST00000362535 133 ntBASIC1.5□□□□□ -2.17
HOXD13P35453 RNU6-136P-201ENST00000384663 107 ntBASIC1.5□□□□□ -2.17
HOXD13P35453 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.5□□□□□ -2.17
HOXD13P35453 SNRPGP13-201ENST00000442212 177 ntBASIC1.5□□□□□ -2.17
HOXD13P35453 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.5□□□□□ -2.17
HOXD13P35453 RNA5SP168-201ENST00000516642 112 ntBASIC1.5□□□□□ -2.17
HOXD13P35453 AL512310.8-201ENST00000550183 120 ntBASIC1.5□□□□□ -2.17
HOXD13P35453 MIR4769-201ENST00000584126 77 ntBASIC1.5□□□□□ -2.17
HOXD13P35453 AC092447.9-201ENST00000603395 144 ntBASIC1.5□□□□□ -2.17
HOXD13P35453 MIR8065-201ENST00000620577 100 ntBASIC1.5□□□□□ -2.17
HOXD13P35453 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.5□□□□□ -2.17
HOXD13P35453 RNA5SP432-201ENST00000362480 116 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 Y_RNA.446-201ENST00000384178 104 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 AL160004.2-201ENST00000432935 350 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 RNU7-95P-201ENST00000459222 64 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 RNU6-1170P-201ENST00000515974 106 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 SNORA40.14-201ENST00000516543 86 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 Y_RNA.713-201ENST00000517013 96 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 RN7SKP295-201ENST00000517264 153 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 AC055872.1-201ENST00000570978 278 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 AL513534.2-201ENST00000603836 250 ntBASIC1.49□□□□□ -2.17
HOXD13P35453 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
HOXD13P35453 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.49□□□□□ -2.17
HOXD13P35453 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
HOXD13P35453 AP000648.3-201ENST00000623539 4507 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 Y_RNA.58-201ENST00000362807 102 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 RNU6-199P-201ENST00000362954 107 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 Y_RNA.101-201ENST00000363154 102 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 RNU4-73P-201ENST00000363164 141 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 Y_RNA.154-201ENST00000363624 102 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 RNY3P1-201ENST00000365085 102 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 RNY3-201ENST00000365484 102 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 Y_RNA.431-201ENST00000384086 102 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.48□□□□□ -2.17
HOXD13P35453 AL162725.1-201ENST00000435405 301 ntBASIC1.48□□□□□ -2.17
HOXD13P35453 AC004223.1-201ENST00000479840 271 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 139.5 ms