Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC011476.5-201ENST00000615594 130 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 U6.115-201ENST00000636045 103 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 AP000648.3-201ENST00000623539 4507 ntBASIC1.6□□□□□ -2.15
CPSF3Q9UKF6 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 SNORA27.1-201ENST00000362604 124 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.252-201ENST00000364556 101 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 RNU5E-4P-201ENST00000364931 120 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 RNU6-867P-201ENST00000364956 107 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 RNU6-203P-201ENST00000384038 104 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 MIR320A-201ENST00000385302 82 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 SNORD78.2-201ENST00000391076 69 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 AL354695.1-201ENST00000427935 228 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 FCF1P4-201ENST00000448326 183 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 AC097462.1-201ENST00000514125 324 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.661-201ENST00000516003 99 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 SNORA31.10-201ENST00000516482 106 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 AC023442.1-201ENST00000531247 422 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 VN1R91P-201ENST00000594377 169 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 U6.92-201ENST00000636464 89 ntBASIC1.59□□□□□ -2.15
CPSF3Q9UKF6 Y_RNA.27-201ENST00000362540 103 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 RNU1-22P-201ENST00000363334 158 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 AL161935.2-201ENST00000414627 60 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 BTF3P4-201ENST00000418852 495 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 AC018865.2-201ENST00000423631 129 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 RNU6-976P-201ENST00000516086 111 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 RNA5SP458-201ENST00000516188 119 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 RNU4-77P-201ENST00000516692 156 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 MIR3684-201ENST00000579779 74 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 AC092447.9-201ENST00000603395 144 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 C8orf59P2-201ENST00000603441 271 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 AC004467.1-201ENST00000615678 330 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 AC100821.1-201ENST00000523153 2479 ntBASIC1.58□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.124-201ENST00000363339 93 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.243-201ENST00000364481 109 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 RNU6-407P-201ENST00000365280 104 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.419-201ENST00000384041 102 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 AC010154.1-201ENST00000425857 269 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 RNU7-95P-201ENST00000459222 64 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 RNA5SP445-201ENST00000515889 115 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 RNA5SP20-201ENST00000515976 84 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 RNU2-12P-201ENST00000517216 168 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 MIR4659A-201ENST00000580269 81 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 AL929325.1-201ENST00000603096 117 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 AC073413.2-201ENST00000604332 360 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 SNORD58B-201ENST00000607313 66 ntBASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CPSF3Q9UKF6 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 U8.1-201ENST00000362843 134 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.101-201ENST00000363154 102 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.197-201ENST00000364004 102 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 RNU1-115P-201ENST00000365329 160 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 RNU6-1310P-201ENST00000384153 107 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 MIR194-1-201ENST00000384892 85 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 SNORA12.1-201ENST00000390873 148 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 MRPL35P1-201ENST00000404272 572 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 AC022028.1-201ENST00000412054 408 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 MTCO3P19-201ENST00000415864 321 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 AP1B1P2-201ENST00000416196 106 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 COX6CP10-201ENST00000416832 224 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 AC245047.3-201ENST00000429428 127 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 AC099513.1-201ENST00000490423 301 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 RNU7-172P-201ENST00000517125 64 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 DNAJC19P9-201ENST00000555084 351 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 MIR4709-201ENST00000577272 72 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 MIR5188-201ENST00000583467 113 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 AL080274.1-201ENST00000605565 220 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 AL512598.1-201ENST00000610158 273 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 AC240442.1-201ENST00000616055 283 ntBASIC1.56□□□□□ -2.16
CPSF3Q9UKF6 MIR302D-201ENST00000362275 68 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 SNORD33-201ENST00000362761 85 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 SNORD115-30-201ENST00000364117 82 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.361-201ENST00000365515 120 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 RNY1P14-201ENST00000384426 108 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 MIR873-201ENST00000401120 77 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 HSPE1P24-201ENST00000450782 238 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 RNU1-98P-201ENST00000458992 160 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 RNU7-34P-201ENST00000459394 64 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 RNU6-966P-201ENST00000516479 104 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 RNU6-902P-201ENST00000517212 91 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 AL390123.1-201ENST00000603216 237 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 AL050343.2-201ENST00000607338 280 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 MIR8054-201ENST00000620877 86 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 AL606534.2-204ENST00000635008 178 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 AC018630.2-201ENST00000534866 2403 ntBASIC1.55□□□□□ -2.16
CPSF3Q9UKF6 MIR378A-201ENST00000362177 66 ntBASIC1.54□□□□□ -2.16
CPSF3Q9UKF6 Y_RNA.39-201ENST00000362620 98 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms