Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ACA59.1-201ENST00000515966 143 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 RNU6-496P-201ENST00000516145 99 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 RNU6-1281P-201ENST00000516223 105 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.54□□□□□ -2.32
LMX1AQ8TE12 APOOP3-201ENST00000536787 586 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 AL357312.1-201ENST00000603879 298 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 AC004832.4-201ENST00000608952 331 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 AC010999.1-201ENST00000611856 324 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.54□□□□□ -2.32
LMX1AQ8TE12 MIR924-201ENST00000638017 53 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.184-201ENST00000363884 108 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.490-201ENST00000384413 102 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 MIR562-201ENST00000384894 95 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 MIR92A1-201ENST00000385233 78 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.53□□□□□ -2.32
LMX1AQ8TE12 RPL30P16-201ENST00000419341 429 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.53□□□□□ -2.32
LMX1AQ8TE12 MTCO2P7-201ENST00000446518 666 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.53□□□□□ -2.32
LMX1AQ8TE12 snoU13.25-201ENST00000458945 104 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 RNU7-21P-201ENST00000459430 62 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 RPS27P22-201ENST00000478056 241 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.53□□□□□ -2.32
LMX1AQ8TE12 RNU7-175P-201ENST00000515915 61 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 AC090142.3-201ENST00000519012 385 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 AC023157.2-201ENST00000540596 141 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 MTND3P12-201ENST00000559068 328 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 AC004817.2-201ENST00000561794 651 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 MIR3684-201ENST00000579779 74 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.53□□□□□ -2.32
LMX1AQ8TE12 AC019193.3-201ENST00000609144 554 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 MIR1321-201ENST00000637766 79 ntBASIC0.53□□□□□ -2.32
LMX1AQ8TE12 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.52□□□□□ -2.33
LMX1AQ8TE12 MIR410-201ENST00000362222 80 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 RNU6-1252P-201ENST00000363054 104 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.414-201ENST00000384011 101 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 SNORA20B-201ENST00000384220 132 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 SNORD116-1-201ENST00000384335 95 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 MIR625-201ENST00000385047 85 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
LMX1AQ8TE12 RNU6-332P-201ENST00000391193 108 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 AL451046.2-201ENST00000403074 277 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 RNU5A-5P-201ENST00000411054 116 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 ELOCP21-201ENST00000412558 336 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 MTATP6P13-201ENST00000438531 667 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 MTND1P29-201ENST00000448112 647 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.52□□□□□ -2.33
LMX1AQ8TE12 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.52□□□□□ -2.33
LMX1AQ8TE12 RNU6-322P-201ENST00000516010 103 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 RNU6-1114P-201ENST00000516022 107 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 RNU7-172P-201ENST00000517125 64 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 AP002001.1-203ENST00000534002 267 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 AC022079.1-201ENST00000621546 602 ntBASIC0.52□□□□□ -2.33
LMX1AQ8TE12 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
LMX1AQ8TE12 SNORA1B-201ENST00000362535 133 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.38-201ENST00000362617 102 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.405-201ENST00000383979 100 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.451-201ENST00000384200 100 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.524-201ENST00000384564 100 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.561-201ENST00000384694 100 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 RNA5SP482-201ENST00000391269 118 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 ZNF299P-201ENST00000406845 1804 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.51□□□□□ -2.33
LMX1AQ8TE12 Z98949.2-201ENST00000440996 144 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AC091021.1-201ENST00000468051 388 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AC046134.1-201ENST00000514454 666 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.683-201ENST00000516508 93 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.704-201ENST00000516851 102 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AP003716.2-201ENST00000528260 108 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AL358944.1-201ENST00000528537 144 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AP003484.1-201ENST00000530974 250 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AC005592.1-201ENST00000566527 1640 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AL117336.2-201ENST00000602435 335 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AC068790.6-201ENST00000602558 258 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 AC005828.6-201ENST00000606610 232 ntBASIC0.51□□□□□ -2.33
LMX1AQ8TE12 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
LMX1AQ8TE12 SNORA27.1-201ENST00000362604 124 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.51-201ENST00000362725 102 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.265-201ENST00000364677 108 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 RNU6-117P-201ENST00000365415 107 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 RNU6-1145P-201ENST00000384246 107 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 Y_RNA.533-201ENST00000384596 114 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 MIR329-1-201ENST00000385028 80 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 MTCYBP4-201ENST00000401524 249 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 EIF1P2-201ENST00000428233 350 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 MTND3P23-201ENST00000431980 347 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 MTND1P1-201ENST00000445453 368 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 AC093850.1-201ENST00000454121 251 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 AL049830.1-201ENST00000468034 425 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 SNORA70.12-201ENST00000516084 153 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 RNA5SP255-201ENST00000516370 107 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 AP002004.2-201ENST00000531656 154 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.5□□□□□ -2.33
LMX1AQ8TE12 7SK.7-201ENST00000603504 247 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 AL096861.1-201ENST00000610899 123 ntBASIC0.5□□□□□ -2.33
LMX1AQ8TE12 AL391903.3-201ENST00000612158 163 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 161.9 ms