Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 Y_RNA.598-201ENST00000410480 95 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 MTND3P9-201ENST00000429526 346 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 RPL17P19-201ENST00000489069 552 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.39□□□□□ -2.47
USP54Q70EL1 AC114811.1-201ENST00000507207 168 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 RNU6-410P-201ENST00000517006 107 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 AC090897.1-201ENST00000580909 226 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 MIR548AR-201ENST00000582191 57 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 AL139418.1-201ENST00000613613 177 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 AC104010.1-201ENST00000616889 150 ntBASIC-0.39□□□□□ -2.47
USP54Q70EL1 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-0.39□□□□□ -2.47
USP54Q70EL1 RNU6-280P-201ENST00000364145 104 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 RNA5SP128-201ENST00000365305 116 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 RNU6-364P-201ENST00000384387 107 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 MIR106A-201ENST00000384870 81 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-0.4□□□□□ -2.47
USP54Q70EL1 RNU7-138P-201ENST00000459479 64 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-0.4□□□□□ -2.47
USP54Q70EL1 RNU6-1278P-201ENST00000516130 107 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 RN7SKP287-201ENST00000516546 266 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC-0.4□□□□□ -2.47
USP54Q70EL1 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 AC008873.1-201ENST00000625051 138 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 SCARNA4-201ENST00000629045 128 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 RNU6-376P-201ENST00000384731 106 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 MIR516B2-201ENST00000385190 85 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 SNORD73A-201ENST00000386062 65 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC-0.4□□□□□ -2.47
USP54Q70EL1 MRPS10P2-201ENST00000431226 381 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 SCARNA8-201ENST00000515924 131 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 RNU6-1291P-201ENST00000516591 104 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-0.4□□□□□ -2.47
USP54Q70EL1 AK6P2-201ENST00000549020 471 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 U2.17-201ENST00000611454 95 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 MIR6755-201ENST00000619993 66 ntBASIC-0.4□□□□□ -2.47
USP54Q70EL1 SNORD115-8-201ENST00000363856 82 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 RNU6-501P-201ENST00000364072 100 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 SNORD115-38-201ENST00000365037 82 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 Y_RNA.399-201ENST00000383955 105 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.41□□□□□ -2.48
USP54Q70EL1 MTND4LP11-201ENST00000422184 280 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-0.41□□□□□ -2.48
USP54Q70EL1 AC120024.3-201ENST00000603167 156 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 AL607023.1-201ENST00000620045 248 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 AC006504.8-201ENST00000621046 635 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 AL138960.2-201ENST00000625145 535 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 FER-210ENST00000628534 558 ntTSL 5 BASIC-0.41□□□□□ -2.48
USP54Q70EL1 AC006927.3-201ENST00000638789 384 ntBASIC-0.41□□□□□ -2.48
USP54Q70EL1 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC-0.42□□□□□ -2.48
USP54Q70EL1 SNORA72.1-201ENST00000363485 129 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 RNU5E-10P-201ENST00000363506 118 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 RNU6-674P-201ENST00000363831 107 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 RNU4-68P-201ENST00000364314 141 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 RNU6-46P-201ENST00000383860 107 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 RNU6-157P-201ENST00000383957 107 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 RNU6-784P-201ENST00000384330 106 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 RNA5SP451-201ENST00000410588 110 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 AL365184.2-201ENST00000431139 435 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 GPR143P-201ENST00000434155 205 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-0.42□□□□□ -2.48
USP54Q70EL1 RPL39P5-202ENST00000512505 151 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 MIR2115-201ENST00000516657 100 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 RNU6-1220P-201ENST00000517126 108 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 MTND1P5-201ENST00000517906 940 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 MTND2P38-201ENST00000522536 667 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 MTCO3P23-201ENST00000561363 289 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 MIR4251-201ENST00000635819 61 ntBASIC-0.42□□□□□ -2.48
USP54Q70EL1 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 RNA5SP275-201ENST00000363936 118 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 RNA5SP48-201ENST00000363969 126 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 SNORD14.1-201ENST00000365609 90 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 RNA5SP95-201ENST00000410319 137 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC-0.43□□□□□ -2.48
USP54Q70EL1 MRPS10P1-201ENST00000448483 130 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 SNORD4A-201ENST00000459174 72 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-0.43□□□□□ -2.48
USP54Q70EL1 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-0.43□□□□□ -2.48
USP54Q70EL1 SCARNA24.1-201ENST00000516465 137 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC-0.43□□□□□ -2.48
USP54Q70EL1 Z84480.1-201ENST00000605131 311 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 AL158211.2-201ENST00000607282 395 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 uc_338.36-201ENST00000622331 158 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 SNORD49B-201ENST00000365172 72 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 RNA5SP266-201ENST00000410273 108 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 AC069271.1-201ENST00000445577 156 ntBASIC-0.43□□□□□ -2.48
USP54Q70EL1 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-0.43□□□□□ -2.48
USP54Q70EL1 Y_RNA.123-201ENST00000363338 102 ntBASIC-0.44□□□□□ -2.48
USP54Q70EL1 RNU6-652P-201ENST00000365488 107 ntBASIC-0.44□□□□□ -2.48
USP54Q70EL1 RNU6-74P-201ENST00000384235 107 ntBASIC-0.44□□□□□ -2.48
USP54Q70EL1 MTCO2P33-201ENST00000402100 465 ntBASIC-0.44□□□□□ -2.48
USP54Q70EL1 ELOCP21-201ENST00000412558 336 ntBASIC-0.44□□□□□ -2.48
USP54Q70EL1 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-0.44□□□□□ -2.48
USP54Q70EL1 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-0.44□□□□□ -2.48
USP54Q70EL1 MTND1P17-201ENST00000448961 204 ntBASIC-0.44□□□□□ -2.48
USP54Q70EL1 ZNF114P1-201ENST00000453500 292 ntBASIC-0.44□□□□□ -2.48
USP54Q70EL1 AF186996.7-201ENST00000492781 209 ntBASIC-0.44□□□□□ -2.48
USP54Q70EL1 MTND4P33-201ENST00000556706 766 ntBASIC-0.44□□□□□ -2.48
USP54Q70EL1 AC005176.2-201ENST00000596933 147 ntBASIC-0.44□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms