Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNU2-12P-201ENST00000517216 168 ntBASIC1.6□□□□□ -2.15
SOX3P41225 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.6□□□□□ -2.15
SOX3P41225 AL137100.2-201ENST00000555786 315 ntBASIC1.6□□□□□ -2.15
SOX3P41225 MIR3618-201ENST00000580330 88 ntBASIC1.6□□□□□ -2.15
SOX3P41225 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.6□□□□□ -2.15
SOX3P41225 AC005176.2-201ENST00000596933 147 ntBASIC1.6□□□□□ -2.15
SOX3P41225 AC005034.5-201ENST00000604219 466 ntBASIC1.6□□□□□ -2.15
SOX3P41225 AC069114.2-201ENST00000604699 304 ntBASIC1.6□□□□□ -2.15
SOX3P41225 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.6□□□□□ -2.15
SOX3P41225 U6.73-201ENST00000619194 103 ntBASIC1.6□□□□□ -2.15
SOX3P41225 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
SOX3P41225 RNU1-17P-201ENST00000363022 152 ntBASIC1.59□□□□□ -2.15
SOX3P41225 RNU6-112P-201ENST00000363599 104 ntBASIC1.59□□□□□ -2.15
SOX3P41225 Y_RNA.153-201ENST00000363615 91 ntBASIC1.59□□□□□ -2.15
SOX3P41225 SNORA63.7-201ENST00000365579 123 ntBASIC1.59□□□□□ -2.15
SOX3P41225 SNORA20B-201ENST00000384220 132 ntBASIC1.59□□□□□ -2.15
SOX3P41225 Y_RNA.462-201ENST00000384268 102 ntBASIC1.59□□□□□ -2.15
SOX3P41225 Y_RNA.471-201ENST00000384312 102 ntBASIC1.59□□□□□ -2.15
SOX3P41225 RNA5SP467-201ENST00000391274 118 ntBASIC1.59□□□□□ -2.15
SOX3P41225 RNU2-54P-201ENST00000410299 190 ntBASIC1.59□□□□□ -2.15
SOX3P41225 AC244636.1-201ENST00000421152 228 ntBASIC1.59□□□□□ -2.15
SOX3P41225 AC245047.4-201ENST00000433189 144 ntBASIC1.59□□□□□ -2.15
SOX3P41225 RPEP5-201ENST00000441137 268 ntBASIC1.59□□□□□ -2.15
SOX3P41225 RPL23AP6-201ENST00000446637 472 ntBASIC1.59□□□□□ -2.15
SOX3P41225 RNU6-237P-201ENST00000515985 71 ntBASIC1.59□□□□□ -2.15
SOX3P41225 Y_RNA.713-201ENST00000517013 96 ntBASIC1.59□□□□□ -2.15
SOX3P41225 AC024995.1-201ENST00000523014 93 ntBASIC1.59□□□□□ -2.15
SOX3P41225 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.59□□□□□ -2.15
SOX3P41225 AC084364.2-201ENST00000546924 395 ntBASIC1.59□□□□□ -2.15
SOX3P41225 MIR4299-201ENST00000577899 72 ntBASIC1.59□□□□□ -2.15
SOX3P41225 MIR4423-201ENST00000580922 80 ntBASIC1.59□□□□□ -2.15
SOX3P41225 AC124312.5-201ENST00000604451 268 ntBASIC1.59□□□□□ -2.15
SOX3P41225 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.16
SOX3P41225 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.58□□□□□ -2.16
SOX3P41225 AC010615.1-201ENST00000594254 1764 ntBASIC1.58□□□□□ -2.16
SOX3P41225 SNORD114-7-201ENST00000362520 77 ntBASIC1.58□□□□□ -2.16
SOX3P41225 Y_RNA.26-201ENST00000362539 101 ntBASIC1.58□□□□□ -2.16
SOX3P41225 SNORA33-201ENST00000363664 130 ntBASIC1.58□□□□□ -2.16
SOX3P41225 SNORA72.2-201ENST00000365028 127 ntBASIC1.58□□□□□ -2.16
SOX3P41225 RNA5SP190-201ENST00000365222 118 ntBASIC1.58□□□□□ -2.16
SOX3P41225 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.58□□□□□ -2.16
SOX3P41225 Y_RNA.439-201ENST00000384119 94 ntBASIC1.58□□□□□ -2.16
SOX3P41225 RNU6-296P-201ENST00000384608 107 ntBASIC1.58□□□□□ -2.16
SOX3P41225 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
SOX3P41225 RNU6-482P-201ENST00000391068 107 ntBASIC1.58□□□□□ -2.16
SOX3P41225 RNU6-101P-201ENST00000410323 104 ntBASIC1.58□□□□□ -2.16
SOX3P41225 RNU6-1199P-201ENST00000411249 104 ntBASIC1.58□□□□□ -2.16
SOX3P41225 AC005002.2-201ENST00000438228 269 ntBASIC1.58□□□□□ -2.16
SOX3P41225 SUMO1P2-201ENST00000452524 304 ntBASIC1.58□□□□□ -2.16
SOX3P41225 AC010655.3-201ENST00000478818 450 ntBASIC1.58□□□□□ -2.16
SOX3P41225 AC010409.1-201ENST00000487382 476 ntBASIC1.58□□□□□ -2.16
SOX3P41225 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
SOX3P41225 MRPS17P9-201ENST00000511924 393 ntBASIC1.58□□□□□ -2.16
SOX3P41225 Y_RNA.715-201ENST00000517082 110 ntBASIC1.58□□□□□ -2.16
SOX3P41225 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.58□□□□□ -2.16
SOX3P41225 AC022254.1-201ENST00000567857 235 ntBASIC1.58□□□□□ -2.16
SOX3P41225 MIR3683-201ENST00000580847 82 ntBASIC1.58□□□□□ -2.16
SOX3P41225 AC022441.3-201ENST00000605737 136 ntBASIC1.58□□□□□ -2.16
SOX3P41225 Y_RNA.812-201ENST00000610788 101 ntBASIC1.58□□□□□ -2.16
SOX3P41225 Y_RNA.784-201ENST00000613803 101 ntBASIC1.58□□□□□ -2.16
SOX3P41225 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.58□□□□□ -2.16
SOX3P41225 Y_RNA.787-201ENST00000616522 101 ntBASIC1.58□□□□□ -2.16
SOX3P41225 Y_RNA.780-201ENST00000617336 101 ntBASIC1.58□□□□□ -2.16
SOX3P41225 Y_RNA.801-201ENST00000619005 101 ntBASIC1.58□□□□□ -2.16
SOX3P41225 U6.108-201ENST00000637764 58 ntBASIC1.58□□□□□ -2.16
SOX3P41225 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
SOX3P41225 SNORA27.1-201ENST00000362604 124 ntBASIC1.57□□□□□ -2.16
SOX3P41225 Y_RNA.105-201ENST00000363182 111 ntBASIC1.57□□□□□ -2.16
SOX3P41225 Y_RNA.361-201ENST00000365515 120 ntBASIC1.57□□□□□ -2.16
SOX3P41225 Y_RNA.380-201ENST00000365663 111 ntBASIC1.57□□□□□ -2.16
SOX3P41225 Y_RNA.389-201ENST00000383924 113 ntBASIC1.57□□□□□ -2.16
SOX3P41225 SNORD63-201ENST00000384262 68 ntBASIC1.57□□□□□ -2.16
SOX3P41225 Y_RNA.570-201ENST00000384750 101 ntBASIC1.57□□□□□ -2.16
SOX3P41225 MIR1252-201ENST00000408861 65 ntBASIC1.57□□□□□ -2.16
SOX3P41225 RNU5A-5P-201ENST00000411054 116 ntBASIC1.57□□□□□ -2.16
SOX3P41225 RPL31P63-201ENST00000422565 375 ntBASIC1.57□□□□□ -2.16
SOX3P41225 SNORD13-201ENST00000459299 104 ntBASIC1.57□□□□□ -2.16
SOX3P41225 RNU7-99P-201ENST00000516271 62 ntBASIC1.57□□□□□ -2.16
SOX3P41225 RNU1-142P-201ENST00000516682 145 ntBASIC1.57□□□□□ -2.16
SOX3P41225 AC027419.1-201ENST00000522976 328 ntBASIC1.57□□□□□ -2.16
SOX3P41225 AC006380.1-201ENST00000603598 186 ntBASIC1.57□□□□□ -2.16
SOX3P41225 MIR502-201ENST00000606349 86 ntBASIC1.57□□□□□ -2.16
SOX3P41225 AL359075.3-201ENST00000613288 217 ntBASIC1.57□□□□□ -2.16
SOX3P41225 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.56□□□□□ -2.16
SOX3P41225 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
SOX3P41225 SNORD115-30-201ENST00000364117 82 ntBASIC1.56□□□□□ -2.16
SOX3P41225 SNORA63D-201ENST00000364359 132 ntBASIC1.56□□□□□ -2.16
SOX3P41225 RNU6-806P-201ENST00000365147 105 ntBASIC1.56□□□□□ -2.16
SOX3P41225 Y_RNA.446-201ENST00000384178 104 ntBASIC1.56□□□□□ -2.16
SOX3P41225 RNU6-738P-201ENST00000384531 106 ntBASIC1.56□□□□□ -2.16
SOX3P41225 MIR606-201ENST00000384851 96 ntBASIC1.56□□□□□ -2.16
SOX3P41225 AL390729.2-201ENST00000416137 156 ntBASIC1.56□□□□□ -2.16
SOX3P41225 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.56□□□□□ -2.16
SOX3P41225 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.56□□□□□ -2.16
SOX3P41225 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.56□□□□□ -2.16
SOX3P41225 RNA5SP57-201ENST00000459463 123 ntBASIC1.56□□□□□ -2.16
SOX3P41225 RPS27P22-201ENST00000478056 241 ntBASIC1.56□□□□□ -2.16
SOX3P41225 AL163195.1-201ENST00000496941 348 ntBASIC1.56□□□□□ -2.16
SOX3P41225 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.56□□□□□ -2.16
SOX3P41225 RNU6-1046P-201ENST00000516538 107 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms