Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
HOXC9P31274 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
HOXC9P31274 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.94□□□□□ -2.1
HOXC9P31274 SNORA63-201ENST00000363450 132 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 SNORA33.2-201ENST00000365413 134 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 Y_RNA.458-201ENST00000384240 102 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 RNU6-417P-201ENST00000384712 107 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 RNU6-823P-201ENST00000391042 103 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 MRPL35P1-201ENST00000404272 572 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.93□□□□□ -2.1
HOXC9P31274 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.93□□□□□ -2.1
HOXC9P31274 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.93□□□□□ -2.1
HOXC9P31274 AL353689.1-201ENST00000438895 199 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 RPEP5-201ENST00000441137 268 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 AC093852.1-201ENST00000503587 266 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
HOXC9P31274 MIR514B-201ENST00000516774 80 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.93□□□□□ -2.1
HOXC9P31274 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.93□□□□□ -2.1
HOXC9P31274 MIR5094-201ENST00000578766 85 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 AC005786.1-201ENST00000588553 154 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 AC005176.2-201ENST00000596933 147 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 AL121655.1-201ENST00000605811 308 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 Y_RNA.772-201ENST00000606692 102 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 AC004467.1-201ENST00000615678 330 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 AL359851.1-201ENST00000569460 4997 ntBASIC1.93□□□□□ -2.1
HOXC9P31274 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXC9P31274 snoU2-30.2-201ENST00000362805 70 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 RNU6-626P-201ENST00000363354 107 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 Y_RNA.158-201ENST00000363651 101 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 RNU1-96P-201ENST00000364163 162 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 RNU6-454P-201ENST00000364292 107 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 RNU6-53P-201ENST00000365367 106 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
HOXC9P31274 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.92□□□□□ -2.1
HOXC9P31274 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.92□□□□□ -2.1
HOXC9P31274 MIR4680-201ENST00000580906 66 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 AC012493.3-201ENST00000604494 112 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 AL627230.6-201ENST00000611129 280 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 AL021879.1-201ENST00000611756 288 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 PART1_1.1-201ENST00000611761 217 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 MIR7111-201ENST00000619751 72 ntBASIC1.92□□□□□ -2.1
HOXC9P31274 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXC9P31274 AC117470.1-201ENST00000381974 330 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 RNU6-639P-201ENST00000384074 107 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 RNU6-1310P-201ENST00000384153 107 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 AC099677.2-201ENST00000436385 175 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 U8.20-201ENST00000459445 131 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 RNA5SP57-201ENST00000459463 123 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 RNU6-1146P-201ENST00000516282 102 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 AC022616.4-201ENST00000522985 181 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 AC005034.5-201ENST00000604219 466 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 AL157834.3-201ENST00000615543 103 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 MIR338-201ENST00000636369 67 ntBASIC1.91□□□□□ -2.1
HOXC9P31274 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.91□□□□□ -2.1
HOXC9P31274 Y_RNA.143-201ENST00000363520 106 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 SNORA33-201ENST00000363664 130 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 Y_RNA.287-201ENST00000364853 94 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 Y_RNA.439-201ENST00000384119 94 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 RNU4-52P-201ENST00000384209 138 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 AC005002.2-201ENST00000438228 269 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 SNORD65B-201ENST00000459126 73 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 RNU6-1137P-201ENST00000517073 99 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 Y_RNA.715-201ENST00000517082 110 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 Y_RNA.721-201ENST00000517207 102 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.9□□□□□ -2.11
HOXC9P31274 AL353770.2-201ENST00000620024 78 ntBASIC1.9□□□□□ -2.11
HOXC9P31274 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.9□□□□□ -2.11
HOXC9P31274 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
HOXC9P31274 U8.1-201ENST00000362843 134 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 Y_RNA.101-201ENST00000363154 102 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 Y_RNA.326-201ENST00000365176 113 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 Y_RNA.455-201ENST00000384230 98 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 RNU6-937P-201ENST00000384325 106 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 Y_RNA.551-201ENST00000384661 102 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 RNA5SP467-201ENST00000391274 118 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 RNU6-130P-201ENST00000411112 103 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXC9P31274 MTND2P29-201ENST00000438595 412 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 RPL23AP6-201ENST00000446637 472 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.89□□□□□ -2.11
HOXC9P31274 RPL23AP3-201ENST00000453844 468 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 MRPS17P9-201ENST00000511924 393 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXC9P31274 AC023157.2-201ENST00000540596 141 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 MIR4448-201ENST00000584360 86 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 RAC1P9-201ENST00000604990 392 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 AC010205.1-201ENST00000616668 449 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 uc_338.20-201ENST00000621563 178 ntBASIC1.89□□□□□ -2.11
HOXC9P31274 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HOXC9P31274 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
HOXC9P31274 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
HOXC9P31274 MIR410-201ENST00000362222 80 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 RNU6-1175P-201ENST00000365200 107 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 RNU6-407P-201ENST00000365280 104 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 MIR676-201ENST00000390702 67 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms