Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNU2-70P-201ENST00000410718 179 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 AL445567.1-201ENST00000439121 144 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 RNU6-1208P-201ENST00000459588 107 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 Y_RNA.654-201ENST00000497848 106 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 MTCO2P30-201ENST00000503662 364 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 AC105313.1-201ENST00000509121 353 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.08□□□□□ -2.4
SDCBPO00560 PIGPP4-201ENST00000584447 307 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 AC040904.1-201ENST00000590850 223 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 AC073534.2-201ENST00000620377 381 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.08□□□□□ -2.4
SDCBPO00560 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.08□□□□□ -2.4
SDCBPO00560 AC073544.1-201ENST00000600110 1595 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 MIR18A-201ENST00000362310 71 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 SNORD44.1-201ENST00000363202 61 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 SNORD68-201ENST00000363214 84 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 RNU5A-6P-201ENST00000384136 116 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 RNU6-1103P-201ENST00000384150 107 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 SNORA2B-201ENST00000384583 137 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 RNU6-541P-201ENST00000384709 110 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 MIR598-201ENST00000384868 97 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 AL353572.1-201ENST00000442490 417 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 ZNF736P8Y-201ENST00000451913 669 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 RNA5SP401-201ENST00000515920 127 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 RNU6-63P-201ENST00000516690 95 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 SNORA18.7-201ENST00000516910 131 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 Z94722.1-201ENST00000604328 474 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 AC100812.1-201ENST00000607622 580 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 AC007742.2-201ENST00000618226 398 ntBASIC0.07□□□□□ -2.4
SDCBPO00560 RNA5SP48-201ENST00000363969 126 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 RNU6-280P-201ENST00000364145 104 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 SNORD14.1-201ENST00000365609 90 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 RNU6-1105P-201ENST00000384774 107 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 SNORD37.1-201ENST00000390968 65 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 AL365203.2-201ENST00000423444 196 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 AC073464.1-201ENST00000429823 534 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 SNRPGP12-201ENST00000449481 213 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 PCNPP5-201ENST00000452246 481 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 snoU13.21-201ENST00000459368 105 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 AL358944.1-201ENST00000528537 144 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.06□□□□□ -2.4
SDCBPO00560 AC026371.1-201ENST00000551867 419 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC0.06□□□□□ -2.4
SDCBPO00560 MIR4528-201ENST00000577763 90 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.06□□□□□ -2.4
SDCBPO00560 AC010620.1-201ENST00000601088 1102 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 AL050303.3-201ENST00000613704 284 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.06□□□□□ -2.4
SDCBPO00560 MIR1-1-201ENST00000362147 71 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 RNU6-522P-201ENST00000364497 107 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 RNU4-45P-201ENST00000365469 141 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 RNU6-790P-201ENST00000384479 105 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 MIR514A2-201ENST00000385131 88 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 MIR514A3-201ENST00000385132 88 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 EIF4E2P1-201ENST00000393781 255 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 ELOCP21-201ENST00000412558 336 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 AL390729.2-201ENST00000416137 156 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 MTND1P27-201ENST00000451117 902 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.05□□□□□ -2.4
SDCBPO00560 MTND1P11-201ENST00000456661 876 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 RPS3AP17-201ENST00000472594 777 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 AC083904.1-201ENST00000487828 231 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 AC046134.1-201ENST00000514454 666 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 RNU11-2P-201ENST00000516898 142 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.05□□□□□ -2.4
SDCBPO00560 AC012433.1-201ENST00000588916 398 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 AC104695.3-201ENST00000604052 296 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 AL162730.1-201ENST00000605734 292 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 AL591926.4-201ENST00000616895 298 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.05□□□□□ -2.4
SDCBPO00560 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.05□□□□□ -2.4
SDCBPO00560 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.04□□□□□ -2.4
SDCBPO00560 U8.5-201ENST00000364528 136 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 AC117470.1-201ENST00000381974 330 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 MIR520G-201ENST00000385064 90 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 CALM2P3-201ENST00000400429 449 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 SNORD83.1-201ENST00000411362 77 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 AL590632.1-201ENST00000424289 371 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 MTND3P16-201ENST00000452205 344 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 snoU13.18-201ENST00000459483 104 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 RNU6-261P-201ENST00000459506 102 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.04□□□□□ -2.4
SDCBPO00560 RNU6-1278P-201ENST00000516130 107 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 MTATP6P24-201ENST00000576835 677 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 MIR3612-201ENST00000579753 87 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 MIR4514-201ENST00000581410 57 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 RAC1P9-201ENST00000604990 392 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 AC109347.2-201ENST00000610220 349 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 AL357075.2-201ENST00000614906 189 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 AC015726.2-201ENST00000620112 122 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 AC127459.3-201ENST00000624328 466 ntBASIC0.04□□□□□ -2.4
SDCBPO00560 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.04□□□□□ -2.4
SDCBPO00560 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
SDCBPO00560 RNU6-222P-201ENST00000362438 107 ntBASIC0.03□□□□□ -2.4
SDCBPO00560 RNA5SP62-201ENST00000363457 110 ntBASIC0.03□□□□□ -2.4
SDCBPO00560 RNY1-201ENST00000364228 113 ntBASIC0.03□□□□□ -2.4
SDCBPO00560 RNA5SP517-201ENST00000364724 117 ntBASIC0.03□□□□□ -2.4
SDCBPO00560 Y_RNA.372-201ENST00000365599 102 ntBASIC0.03□□□□□ -2.4
SDCBPO00560 RNU6-281P-201ENST00000384212 103 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms