Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
DKK3Q9UBP4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.56□□□□□ -2
DKK3Q9UBP4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.55□□□□□ -2
DKK3Q9UBP4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
DKK3Q9UBP4 SNORA3A-201ENST00000364113 130 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 RNU6-1305P-201ENST00000364353 104 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 Y_RNA.292-201ENST00000364904 97 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 RNU6-234P-201ENST00000365229 104 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 Y_RNA.361-201ENST00000365515 120 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 RNU6-1289P-201ENST00000384431 106 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 Y_RNA.590-201ENST00000410140 107 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 SUMO1P2-201ENST00000452524 304 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 HMGN2P9-201ENST00000476875 229 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.55□□□□□ -2
DKK3Q9UBP4 RNA5SP320-201ENST00000516263 124 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.55□□□□□ -2
DKK3Q9UBP4 PRELID2P1-201ENST00000552837 301 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 AC005828.6-201ENST00000606610 232 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 MIR6840-201ENST00000611937 71 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 AC004792.1-201ENST00000614523 137 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.55□□□□□ -2
DKK3Q9UBP4 MIR5739-201ENST00000619803 80 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.55□□□□□ -2
DKK3Q9UBP4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.55□□□□□ -2
DKK3Q9UBP4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.54□□□□□ -2
DKK3Q9UBP4 AL596028.1-201ENST00000326971 197 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 RNU4-80P-201ENST00000363200 141 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 SNORD115-30-201ENST00000364117 82 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 Y_RNA.329-201ENST00000365209 107 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 RNU4-70P-201ENST00000384579 139 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 Y_RNA.555-201ENST00000384673 110 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 MIR1283-1-201ENST00000408494 87 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 MIR1185-2-201ENST00000408687 86 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 Y_RNA.626-201ENST00000411288 95 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 AC024067.1-201ENST00000426199 223 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.54□□□□□ -2
DKK3Q9UBP4 CBX3P4-201ENST00000538909 354 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 DEFB117-201ENST00000602356 141 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 AC073349.3-201ENST00000617616 186 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 FTX_2.1-201ENST00000618816 94 ntBASIC2.54□□□□□ -2
DKK3Q9UBP4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.54□□□□□ -2
DKK3Q9UBP4 MIR411-201ENST00000362239 96 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 SNORD114-7-201ENST00000362520 77 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 RNA5SP456-201ENST00000364002 114 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 SNORD31B-201ENST00000364977 69 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 RNU6-209P-201ENST00000384118 107 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 SNORA67.4-201ENST00000384688 142 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 RNU6-651P-201ENST00000411040 105 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.53□□□□□ -2
DKK3Q9UBP4 PIGPP3-201ENST00000425307 415 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 CYP2C59P-201ENST00000457790 269 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 Y_RNA.644-201ENST00000459006 113 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 RNU7-14P-201ENST00000459331 62 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 RNU6-991P-201ENST00000516168 107 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 Y_RNA.674-201ENST00000516362 113 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 Y_RNA.679-201ENST00000516416 91 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 Z83818.1-201ENST00000603584 150 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 CTSLP2-204ENST00000629029 392 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 U6.115-201ENST00000636045 103 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 AC009487.4-201ENST00000624969 3585 ntBASIC2.53□□□□□ -2
DKK3Q9UBP4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.53□□□□□ -2.01
DKK3Q9UBP4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
DKK3Q9UBP4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
DKK3Q9UBP4 RNU6-662P-201ENST00000384253 104 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 MIR518C-201ENST00000384822 101 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 AL161788.1-201ENST00000441805 169 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 AC074290.1-201ENST00000448883 135 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.52□□□□□ -2.01
DKK3Q9UBP4 PRELID3BP1-201ENST00000457142 540 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 AC114982.1-201ENST00000469402 321 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
DKK3Q9UBP4 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.52□□□□□ -2.01
DKK3Q9UBP4 MIR449C-201ENST00000516047 92 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 SNORD116-28-201ENST00000516123 91 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.52□□□□□ -2.01
DKK3Q9UBP4 MIR3145-201ENST00000580727 82 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 AC025754.2-201ENST00000606491 432 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.52□□□□□ -2.01
DKK3Q9UBP4 MIR7111-201ENST00000619751 72 ntBASIC2.52□□□□□ -2.01
DKK3Q9UBP4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
DKK3Q9UBP4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
DKK3Q9UBP4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
DKK3Q9UBP4 RNU6-545P-201ENST00000362681 104 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 AL031003.1-201ENST00000404229 172 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 SNORD23.1-201ENST00000408212 104 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 RNU6-710P-201ENST00000410424 105 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 Y_RNA.793-201ENST00000411222 111 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 AL135786.1-201ENST00000415892 214 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 AC090515.1-201ENST00000465295 476 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 RPS29P21-201ENST00000496272 170 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 ATP5EP1-201ENST00000510257 156 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 MIR4753-201ENST00000585119 83 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.51□□□□□ -2.01
DKK3Q9UBP4 AL137847.3-201ENST00000611521 109 ntBASIC2.51□□□□□ -2.01
DKK3Q9UBP4 AL078604.3-201ENST00000615580 211 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 162.4 ms