Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FO082796.1-201ENST00000523795 183 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AL590705.4-201ENST00000532209 134 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC0.58□□□□□ -2.32
LMX1AQ8TE12 MIR3672-201ENST00000584290 82 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AC010525.2-201ENST00000590920 195 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 DISC2.1-201ENST00000612827 205 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.58□□□□□ -2.32
LMX1AQ8TE12 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AC099654.12-201ENST00000639868 649 ntBASIC0.58□□□□□ -2.32
LMX1AQ8TE12 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.58□□□□□ -2.32
LMX1AQ8TE12 AC023934.1-201ENST00000574529 2389 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.212-201ENST00000364177 102 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 RNU6-790P-201ENST00000384479 105 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.530-201ENST00000384587 101 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 MIR10B-201ENST00000385011 110 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.615-201ENST00000410769 117 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AC063976.4-201ENST00000421971 163 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AL606490.4-201ENST00000423117 127 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AL590632.1-201ENST00000424289 371 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.57□□□□□ -2.32
LMX1AQ8TE12 MRPS10P1-201ENST00000448483 130 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 OR9P1P-201ENST00000496431 281 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 RNU6-229P-201ENST00000516614 102 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 RNA5SP168-201ENST00000516642 112 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AL512360.1-201ENST00000555346 234 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 MTND1P15-201ENST00000579262 949 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AC091178.2-201ENST00000584401 117 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 MIR4438-201ENST00000585271 93 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 POLR3GP2-201ENST00000588366 668 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AL512605.2-201ENST00000592972 256 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AC080078.2-201ENST00000603766 501 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 PRELID3BP2-201ENST00000605362 201 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 SNORA28-201ENST00000606769 126 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AC243829.3-201ENST00000622177 108 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 AC106754.2-201ENST00000623006 233 ntBASIC0.57□□□□□ -2.32
LMX1AQ8TE12 RNU5F-3P-201ENST00000363767 117 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.179-201ENST00000363844 90 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 SNORA2.2-201ENST00000365473 135 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 RNU6-969P-201ENST00000383900 105 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 RNU6-281P-201ENST00000384212 103 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 MIR608-201ENST00000384820 100 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 MIR517A-201ENST00000385001 87 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 MIR605-201ENST00000385078 83 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 MTCO3P19-201ENST00000415864 321 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 SNORD124-201ENST00000459577 104 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.56□□□□□ -2.32
LMX1AQ8TE12 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.56□□□□□ -2.32
LMX1AQ8TE12 RNU6-197P-201ENST00000516680 100 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 RNU6-256P-201ENST00000516747 97 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 RNU7-28P-201ENST00000516759 62 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.56□□□□□ -2.32
LMX1AQ8TE12 AC091144.1-201ENST00000519573 138 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 ZNF519P2-201ENST00000557032 169 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 UBL5P4-201ENST00000562584 236 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 MIR4711-201ENST00000578274 70 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 MIR3611-201ENST00000584484 83 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 AL162413.1-201ENST00000603198 110 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 AC092954.2-201ENST00000609103 430 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 MIR6079-201ENST00000635807 62 ntBASIC0.56□□□□□ -2.32
LMX1AQ8TE12 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AP000568.1-201ENST00000282964 442 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 MIRLET7C-201ENST00000362160 84 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNU6-1266P-201ENST00000362794 105 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNU6-451P-201ENST00000362921 107 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.124-201ENST00000363339 93 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNU6-727P-201ENST00000363592 107 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNY3P3-201ENST00000363816 102 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNA5SP499-201ENST00000363982 119 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 Y_RNA.373-201ENST00000365600 103 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNU6-483P-201ENST00000384088 108 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNU6-1042P-201ENST00000384204 107 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 SNORA80D-201ENST00000384488 135 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 U8.16-201ENST00000391279 133 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNA5SP193-201ENST00000410353 107 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 CALM2P4-201ENST00000430810 426 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AC092628.1-201ENST00000436250 252 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AC010469.2-201ENST00000496412 480 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AC107401.1-201ENST00000503426 685 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.55□□□□□ -2.32
LMX1AQ8TE12 PDCD5P2-201ENST00000507570 312 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AC097462.1-201ENST00000514125 324 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNU6-341P-201ENST00000516973 96 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AC134698.4-201ENST00000523451 826 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AL121579.1-201ENST00000555129 305 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 MIR4778-201ENST00000577635 80 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 NBR2-204ENST00000587322 63 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 AC124303.1-201ENST00000605703 360 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.55□□□□□ -2.32
LMX1AQ8TE12 RNU6-595P-201ENST00000363944 107 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 SNORD116-11-201ENST00000383882 92 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 RNU6-541P-201ENST00000384709 110 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 RNU6-780P-201ENST00000391030 104 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 AL355796.1-201ENST00000406706 323 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 STAG3L5P-204ENST00000443759 179 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 AP000870.1-201ENST00000472927 406 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 AC092989.1-201ENST00000481235 277 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 AC022493.2-201ENST00000506122 481 ntBASIC0.54□□□□□ -2.32
LMX1AQ8TE12 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 172.5 ms