Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.4-201ENST00000362333 112 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.106-201ENST00000363189 100 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.146-201ENST00000363549 102 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 SNORA18.2-201ENST00000383865 132 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 SNORA67.2-201ENST00000384300 149 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 RNY1P14-201ENST00000384426 108 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.577-201ENST00000384794 101 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 RNU1-139P-201ENST00000391307 165 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 MIR190B-201ENST00000401119 79 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 AL117342.1-201ENST00000404861 406 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 RNU4-62P-201ENST00000410125 130 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 MTND4P28-201ENST00000426217 387 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 MTND1P14-201ENST00000427400 950 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 EIF1P2-201ENST00000428233 350 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 UBE2V1P7-201ENST00000446395 340 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 RNA5SP61-201ENST00000516453 100 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 RNU4-77P-201ENST00000516692 156 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 AC008269.2-201ENST00000561915 1105 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 MIR4709-201ENST00000577272 72 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 AC044792.1-201ENST00000593294 196 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 AL356055.1-201ENST00000602528 446 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 SNORD58B-201ENST00000607313 66 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 AC005562.2-201ENST00000618264 111 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 BX322639.1-202ENST00000423987 2213 ntBASIC1.35□□□□□ -2.19
ZNF540Q8NDQ6 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-490P-201ENST00000362985 107 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.148-201ENST00000363557 117 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.238-201ENST00000364441 102 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.319-201ENST00000365138 92 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-318P-201ENST00000384283 103 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-950P-201ENST00000384651 107 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 Y_RNA.557-201ENST00000384680 107 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-159P-201ENST00000391080 106 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 RNU6-1156P-201ENST00000410365 100 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 MTCO3P8-201ENST00000453691 755 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 RPS26P45-201ENST00000471748 340 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 SNORA31.24-201ENST00000517232 57 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 AL359821.1-201ENST00000605519 182 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 AC007485.1-201ENST00000616755 206 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 AC095038.3-201ENST00000634439 195 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 MIR4272-201ENST00000635924 64 ntBASIC1.34□□□□□ -2.19
ZNF540Q8NDQ6 MTND5P16-201ENST00000460269 1703 ntBASIC1.34□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.11-201ENST00000362375 109 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNA5SP361-201ENST00000362686 118 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.164-201ENST00000363709 102 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-873P-201ENST00000363833 107 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-60P-201ENST00000364792 103 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.364-201ENST00000365532 101 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.431-201ENST00000384086 102 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-281P-201ENST00000384212 103 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-708P-201ENST00000384217 107 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-1235P-201ENST00000384559 107 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 MIR153-2-201ENST00000385225 87 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.592-201ENST00000410274 109 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 MTCYBP10-201ENST00000424905 650 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 MTND4P19-201ENST00000446659 478 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-498P-201ENST00000459468 107 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 TRMT112P2-201ENST00000512910 132 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNU7-175P-201ENST00000515915 61 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-976P-201ENST00000516086 111 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.711-201ENST00000516993 102 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 AC100812.1-201ENST00000607622 580 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 AL357075.2-201ENST00000614906 189 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 MIR8065-201ENST00000620577 100 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 ZNF204P-201ENST00000416749 2397 ntBASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
ZNF540Q8NDQ6 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-545P-201ENST00000362681 104 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.80-201ENST00000362996 102 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.358-201ENST00000365491 99 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-1227P-201ENST00000383981 107 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-418P-201ENST00000384035 107 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.485-201ENST00000384395 102 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 Y_RNA.645-201ENST00000391229 102 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 RNA5SP247-201ENST00000411181 105 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 MCFD2P1-201ENST00000417812 300 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AC060773.1-201ENST00000421698 310 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 MTCO2P12-201ENST00000427426 682 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AC096644.2-201ENST00000429278 159 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AC092423.1-201ENST00000430165 186 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AC091179.3-201ENST00000474761 144 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-1114P-201ENST00000516022 107 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 RNU6-307P-201ENST00000516743 106 ntBASIC1.32□□□□□ -2.2
ZNF540Q8NDQ6 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms