Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 AL158209.2-201ENST00000619266 216 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 AC008873.1-201ENST00000625051 138 ntBASIC0.14□□□□□ -2.39
CCDC88AQ3V6T2 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 MIR103A1-201ENST00000362165 78 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 SNORA1B-201ENST00000362535 133 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-1120P-201ENST00000362988 108 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-873P-201ENST00000363833 107 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 SNORD115-32-201ENST00000364079 82 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 MIR520C-201ENST00000385005 87 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 AL606923.1-201ENST00000406616 190 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 MIR1295A-201ENST00000408463 79 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-584P-201ENST00000410350 95 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 MTND2P18-201ENST00000419962 1030 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 MTCO2P11-201ENST00000431069 680 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 AL356010.1-201ENST00000456364 102 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 AC108740.1-201ENST00000498629 225 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 AC104576.1-201ENST00000524225 88 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 TUSC7.1-201ENST00000610969 165 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 AC240442.1-201ENST00000616055 283 ntBASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.13□□□□□ -2.39
CCDC88AQ3V6T2 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-349P-201ENST00000362402 107 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 AL663109.1-201ENST00000411498 844 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 TPTE2P5-203ENST00000458118 728 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-311P-201ENST00000516224 102 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 AC092354.1-201ENST00000606057 376 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 AC097065.2-201ENST00000608159 533 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 FGF7P2-201ENST00000332473 296 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 SNORA9.1-201ENST00000362412 131 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 Y_RNA.179-201ENST00000363844 90 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 SNORA2B-201ENST00000384583 137 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 Y_RNA.549-201ENST00000384657 102 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-700P-201ENST00000391043 107 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 SNORA18.6-201ENST00000516792 115 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 AC011195.1-201ENST00000578177 177 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 AC005014.3-201ENST00000605985 190 ntBASIC0.12□□□□□ -2.39
CCDC88AQ3V6T2 MIR136-201ENST00000385207 82 ntBASIC0.11□□□□□ -2.39
CCDC88AQ3V6T2 SNORD41-201ENST00000386967 70 ntBASIC0.11□□□□□ -2.39
CCDC88AQ3V6T2 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.11□□□□□ -2.39
CCDC88AQ3V6T2 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC0.11□□□□□ -2.39
CCDC88AQ3V6T2 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.11□□□□□ -2.39
CCDC88AQ3V6T2 USP9YP29-201ENST00000445112 563 ntBASIC0.11□□□□□ -2.39
CCDC88AQ3V6T2 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC0.11□□□□□ -2.39
CCDC88AQ3V6T2 AC073349.3-201ENST00000617616 186 ntBASIC0.11□□□□□ -2.39
CCDC88AQ3V6T2 AC103705.1-201ENST00000619013 241 ntBASIC0.11□□□□□ -2.39
CCDC88AQ3V6T2 MIR411-201ENST00000362239 96 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 RNU4-45P-201ENST00000365469 141 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-1329P-201ENST00000365664 107 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 AC117470.1-201ENST00000381974 330 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-214P-201ENST00000384130 107 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 MIR513B-201ENST00000385136 84 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 CALM2P3-201ENST00000400429 449 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 MTATP6P18-201ENST00000417994 673 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 Z95118.1-201ENST00000421372 247 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 AC133104.1-201ENST00000429100 218 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 AC005002.2-201ENST00000438228 269 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 RNU7-125P-201ENST00000458760 62 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 AL096861.1-201ENST00000610899 123 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 AC100810.6-201ENST00000638068 285 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-1303P-201ENST00000364841 107 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 MIR140-201ENST00000385282 100 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 MTND4P32-201ENST00000437189 1237 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 HSFY5P-201ENST00000453726 309 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 AC093850.1-201ENST00000454121 251 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 RNU6-758P-201ENST00000516292 89 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 RPL21P9-201ENST00000556149 474 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 MIR5692C1-201ENST00000585309 91 ntBASIC0.1□□□□□ -2.39
CCDC88AQ3V6T2 MTND5P16-201ENST00000460269 1703 ntBASIC0.09□□□□□ -2.39
CCDC88AQ3V6T2 Y_RNA.100-201ENST00000363141 102 ntBASIC0.09□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-325P-201ENST00000411132 105 ntBASIC0.09□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-177P-201ENST00000411257 104 ntBASIC0.09□□□□□ -2.4
CCDC88AQ3V6T2 UBE2D3P4-201ENST00000441973 436 ntBASIC0.09□□□□□ -2.4
CCDC88AQ3V6T2 SNORA68.3-201ENST00000515906 83 ntBASIC0.09□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-1129P-201ENST00000515964 104 ntBASIC0.09□□□□□ -2.4
CCDC88AQ3V6T2 SNORA19.2-201ENST00000516013 114 ntBASIC0.09□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-58P-201ENST00000517143 103 ntBASIC0.09□□□□□ -2.4
CCDC88AQ3V6T2 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.09□□□□□ -2.4
CCDC88AQ3V6T2 SNORD114-15-201ENST00000364687 72 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-125P-201ENST00000384505 107 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-376P-201ENST00000384731 106 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 MIR1302-7-201ENST00000408841 72 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 RNU2-9P-201ENST00000410194 145 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 RNU6-613P-201ENST00000410412 108 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 MTND1P4-201ENST00000435196 415 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 RPL23AP54-201ENST00000495129 419 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 UBL5P4-201ENST00000562584 236 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 MIR3915-201ENST00000578518 97 ntBASIC0.08□□□□□ -2.4
CCDC88AQ3V6T2 AC016597.2-201ENST00000613256 341 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 202.5 ms