Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 U6.73-201ENST00000619194 103 ntBASIC1.06□□□□□ -2.24
MSH6P52701 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.06□□□□□ -2.24
MSH6P52701 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
MSH6P52701 Y_RNA.89-201ENST00000363031 102 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RNU6-595P-201ENST00000363944 107 ntBASIC1.05□□□□□ -2.24
MSH6P52701 Y_RNA.415-201ENST00000384012 112 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RNU6-793P-201ENST00000384233 104 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RNU6-1065P-201ENST00000384513 106 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RNU6-831P-201ENST00000384548 107 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RNU6-1031P-201ENST00000384773 107 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RNU6-1148P-201ENST00000410992 104 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RPL30P16-201ENST00000419341 429 ntBASIC1.05□□□□□ -2.24
MSH6P52701 AC010154.1-201ENST00000425857 269 ntBASIC1.05□□□□□ -2.24
MSH6P52701 TOMM22P2-201ENST00000430735 237 ntBASIC1.05□□□□□ -2.24
MSH6P52701 HAR1A.1-201ENST00000459583 118 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RPS29P25-201ENST00000481709 171 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RNU6-720P-201ENST00000516363 108 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RNA5SP454-201ENST00000517231 127 ntBASIC1.05□□□□□ -2.24
MSH6P52701 RNU7-128P-201ENST00000517247 62 ntBASIC1.05□□□□□ -2.24
MSH6P52701 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.05□□□□□ -2.24
MSH6P52701 AL512310.8-201ENST00000550183 120 ntBASIC1.05□□□□□ -2.24
MSH6P52701 CYP3A52P-201ENST00000563326 91 ntBASIC1.05□□□□□ -2.24
MSH6P52701 AC004584.2-201ENST00000570407 410 ntBASIC1.05□□□□□ -2.24
MSH6P52701 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.05□□□□□ -2.24
MSH6P52701 AL365434.2-201ENST00000607979 234 ntBASIC1.05□□□□□ -2.24
MSH6P52701 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
MSH6P52701 RNA5SP347-201ENST00000362445 119 ntBASIC1.04□□□□□ -2.24
MSH6P52701 RNU6-727P-201ENST00000363592 107 ntBASIC1.04□□□□□ -2.24
MSH6P52701 RNU5F-3P-201ENST00000363767 117 ntBASIC1.04□□□□□ -2.24
MSH6P52701 Y_RNA.179-201ENST00000363844 90 ntBASIC1.04□□□□□ -2.24
MSH6P52701 SNORA25.8-201ENST00000364831 128 ntBASIC1.04□□□□□ -2.24
MSH6P52701 Y_RNA.301-201ENST00000364990 103 ntBASIC1.04□□□□□ -2.24
MSH6P52701 Y_RNA.450-201ENST00000384198 113 ntBASIC1.04□□□□□ -2.24
MSH6P52701 Y_RNA.533-201ENST00000384596 114 ntBASIC1.04□□□□□ -2.24
MSH6P52701 RNU6-306P-201ENST00000384617 107 ntBASIC1.04□□□□□ -2.24
MSH6P52701 MIR10B-201ENST00000385011 110 ntBASIC1.04□□□□□ -2.24
MSH6P52701 AC005002.2-201ENST00000438228 269 ntBASIC1.04□□□□□ -2.24
MSH6P52701 RNU7-34P-201ENST00000459394 64 ntBASIC1.04□□□□□ -2.24
MSH6P52701 OR2A41P-201ENST00000473586 105 ntBASIC1.04□□□□□ -2.24
MSH6P52701 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.04□□□□□ -2.24
MSH6P52701 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.04□□□□□ -2.24
MSH6P52701 AC093303.1-201ENST00000514549 295 ntBASIC1.04□□□□□ -2.24
MSH6P52701 RNU7-99P-201ENST00000516271 62 ntBASIC1.04□□□□□ -2.24
MSH6P52701 AC134698.4-201ENST00000523451 826 ntBASIC1.04□□□□□ -2.24
MSH6P52701 AL590705.4-201ENST00000532209 134 ntBASIC1.04□□□□□ -2.24
MSH6P52701 AC004812.1-201ENST00000540773 146 ntBASIC1.04□□□□□ -2.24
MSH6P52701 AC022432.1-201ENST00000595739 310 ntBASIC1.04□□□□□ -2.24
MSH6P52701 AL390123.1-201ENST00000603216 237 ntBASIC1.04□□□□□ -2.24
MSH6P52701 MZT1P2-201ENST00000604387 248 ntBASIC1.04□□□□□ -2.24
MSH6P52701 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.04□□□□□ -2.24
MSH6P52701 MIR8054-201ENST00000620877 86 ntBASIC1.04□□□□□ -2.24
MSH6P52701 Y_RNA.405-201ENST00000383979 100 ntBASIC1.03□□□□□ -2.24
MSH6P52701 Y_RNA.451-201ENST00000384200 100 ntBASIC1.03□□□□□ -2.24
MSH6P52701 RNU6-281P-201ENST00000384212 103 ntBASIC1.03□□□□□ -2.24
MSH6P52701 Y_RNA.524-201ENST00000384564 100 ntBASIC1.03□□□□□ -2.24
MSH6P52701 Y_RNA.561-201ENST00000384694 100 ntBASIC1.03□□□□□ -2.24
MSH6P52701 RNU6-440P-201ENST00000390882 105 ntBASIC1.03□□□□□ -2.24
MSH6P52701 RNA5SP118-201ENST00000410385 109 ntBASIC1.03□□□□□ -2.24
MSH6P52701 RPL37P10-201ENST00000412884 288 ntBASIC1.03□□□□□ -2.24
MSH6P52701 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.03□□□□□ -2.24
MSH6P52701 RNU6-566P-201ENST00000516790 107 ntBASIC1.03□□□□□ -2.24
MSH6P52701 SUMO2P16-201ENST00000519475 264 ntBASIC1.03□□□□□ -2.24
MSH6P52701 AC019288.1-201ENST00000557918 224 ntBASIC1.03□□□□□ -2.24
MSH6P52701 MIR3664-201ENST00000579074 99 ntBASIC1.03□□□□□ -2.24
MSH6P52701 AL355802.3-201ENST00000607571 545 ntBASIC1.03□□□□□ -2.24
MSH6P52701 AC040896.1-201ENST00000613819 479 ntBASIC1.03□□□□□ -2.24
MSH6P52701 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.03□□□□□ -2.24
MSH6P52701 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
MSH6P52701 ZNF299P-201ENST00000406845 1804 ntBASIC1.02□□□□□ -2.25
MSH6P52701 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
MSH6P52701 Y_RNA.157-201ENST00000363638 102 ntBASIC1.02□□□□□ -2.25
MSH6P52701 RNU6-1013P-201ENST00000384180 107 ntBASIC1.02□□□□□ -2.25
MSH6P52701 Y_RNA.490-201ENST00000384413 102 ntBASIC1.02□□□□□ -2.25
MSH6P52701 Y_RNA.573-201ENST00000384763 105 ntBASIC1.02□□□□□ -2.25
MSH6P52701 MIR1197-201ENST00000408818 88 ntBASIC1.02□□□□□ -2.25
MSH6P52701 RNU6-1186P-201ENST00000410429 97 ntBASIC1.02□□□□□ -2.25
MSH6P52701 PGBD4P5-201ENST00000445958 426 ntBASIC1.02□□□□□ -2.25
MSH6P52701 MTND4P18-201ENST00000447010 465 ntBASIC1.02□□□□□ -2.25
MSH6P52701 MTND1P17-201ENST00000448961 204 ntBASIC1.02□□□□□ -2.25
MSH6P52701 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.02□□□□□ -2.25
MSH6P52701 SNORD65B-201ENST00000459126 73 ntBASIC1.02□□□□□ -2.25
MSH6P52701 AP000870.1-201ENST00000472927 406 ntBASIC1.02□□□□□ -2.25
MSH6P52701 AC068137.4-201ENST00000638485 296 ntBASIC1.02□□□□□ -2.25
MSH6P52701 AC008163.1-202ENST00000636004 2889 ntBASIC1.01□□□□□ -2.25
MSH6P52701 Y_RNA.3-201ENST00000362331 103 ntBASIC1.01□□□□□ -2.25
MSH6P52701 RNA5SP259-201ENST00000365541 109 ntBASIC1.01□□□□□ -2.25
MSH6P52701 RNU6-842P-201ENST00000384269 107 ntBASIC1.01□□□□□ -2.25
MSH6P52701 MRPL42P3-201ENST00000401492 326 ntBASIC1.01□□□□□ -2.25
MSH6P52701 AC009161.1-201ENST00000417306 376 ntBASIC1.01□□□□□ -2.25
MSH6P52701 USP9YP30-201ENST00000430729 455 ntBASIC1.01□□□□□ -2.25
MSH6P52701 SNORD5.1-201ENST00000458800 75 ntBASIC1.01□□□□□ -2.25
MSH6P52701 RNU6-351P-201ENST00000516097 100 ntBASIC1.01□□□□□ -2.25
MSH6P52701 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.01□□□□□ -2.25
MSH6P52701 HSPE1P19-201ENST00000603327 295 ntBASIC1.01□□□□□ -2.25
MSH6P52701 AC010999.1-201ENST00000611856 324 ntBASIC1.01□□□□□ -2.25
MSH6P52701 U4.5-201ENST00000617137 123 ntBASIC1.01□□□□□ -2.25
MSH6P52701 AC243829.3-201ENST00000622177 108 ntBASIC1.01□□□□□ -2.25
MSH6P52701 AC100810.6-201ENST00000638068 285 ntBASIC1.01□□□□□ -2.25
MSH6P52701 RNA5SP327-201ENST00000362494 101 ntBASIC1□□□□□ -2.25
MSH6P52701 RNU6-1266P-201ENST00000362794 105 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms