Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.83□□□□□ -2.12
MSH2P43246 AC055872.1-201ENST00000570978 278 ntBASIC1.83□□□□□ -2.12
MSH2P43246 MIR3684-201ENST00000579779 74 ntBASIC1.83□□□□□ -2.12
MSH2P43246 RPS29P30-201ENST00000600975 111 ntBASIC1.83□□□□□ -2.12
MSH2P43246 AC010205.1-201ENST00000616668 449 ntBASIC1.83□□□□□ -2.12
MSH2P43246 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.82□□□□□ -2.12
MSH2P43246 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.82□□□□□ -2.12
MSH2P43246 Y_RNA.526-201ENST00000384572 110 ntBASIC1.82□□□□□ -2.12
MSH2P43246 RNA5SP467-201ENST00000391274 118 ntBASIC1.82□□□□□ -2.12
MSH2P43246 AL354751.2-201ENST00000415471 210 ntBASIC1.82□□□□□ -2.12
MSH2P43246 snoU13.26-201ENST00000459452 105 ntBASIC1.82□□□□□ -2.12
MSH2P43246 AC010598.1-201ENST00000510378 103 ntBASIC1.82□□□□□ -2.12
MSH2P43246 AC107393.1-201ENST00000512403 346 ntBASIC1.82□□□□□ -2.12
MSH2P43246 Y_RNA.711-201ENST00000516993 102 ntBASIC1.82□□□□□ -2.12
MSH2P43246 AC084364.2-201ENST00000546924 395 ntBASIC1.82□□□□□ -2.12
MSH2P43246 MIR3618-201ENST00000580330 88 ntBASIC1.82□□□□□ -2.12
MSH2P43246 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.82□□□□□ -2.12
MSH2P43246 AC016925.2-201ENST00000605108 242 ntBASIC1.82□□□□□ -2.12
MSH2P43246 MIR8074-201ENST00000615081 81 ntBASIC1.82□□□□□ -2.12
MSH2P43246 AC004467.1-201ENST00000615678 330 ntBASIC1.82□□□□□ -2.12
MSH2P43246 AC006435.5-201ENST00000624486 112 ntBASIC1.82□□□□□ -2.12
MSH2P43246 AC010615.1-201ENST00000594254 1764 ntBASIC1.81□□□□□ -2.12
MSH2P43246 RNU6-626P-201ENST00000363354 107 ntBASIC1.81□□□□□ -2.12
MSH2P43246 SNORA72.2-201ENST00000365028 127 ntBASIC1.81□□□□□ -2.12
MSH2P43246 SNORD14.1-201ENST00000365609 90 ntBASIC1.81□□□□□ -2.12
MSH2P43246 RNU6-20P-201ENST00000384106 107 ntBASIC1.81□□□□□ -2.12
MSH2P43246 SNORA20B-201ENST00000384220 132 ntBASIC1.81□□□□□ -2.12
MSH2P43246 Y_RNA.458-201ENST00000384240 102 ntBASIC1.81□□□□□ -2.12
MSH2P43246 RNU6-296P-201ENST00000384608 107 ntBASIC1.81□□□□□ -2.12
MSH2P43246 AL355796.1-201ENST00000406706 323 ntBASIC1.81□□□□□ -2.12
MSH2P43246 RNU2-7P-201ENST00000410794 178 ntBASIC1.81□□□□□ -2.12
MSH2P43246 AL445685.2-201ENST00000422551 342 ntBASIC1.81□□□□□ -2.12
MSH2P43246 MTND1P14-201ENST00000427400 950 ntBASIC1.81□□□□□ -2.12
MSH2P43246 AL121890.1-201ENST00000435457 205 ntBASIC1.81□□□□□ -2.12
MSH2P43246 RNU6-988P-201ENST00000519081 107 ntBASIC1.81□□□□□ -2.12
MSH2P43246 AC040926.1-201ENST00000530195 238 ntBASIC1.81□□□□□ -2.12
MSH2P43246 AL137100.2-201ENST00000555786 315 ntBASIC1.81□□□□□ -2.12
MSH2P43246 AC020661.2-201ENST00000560114 134 ntBASIC1.81□□□□□ -2.12
MSH2P43246 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.81□□□□□ -2.12
MSH2P43246 MIR4285-201ENST00000581001 85 ntBASIC1.81□□□□□ -2.12
MSH2P43246 AL121655.1-201ENST00000605811 308 ntBASIC1.81□□□□□ -2.12
MSH2P43246 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.81□□□□□ -2.12
MSH2P43246 U6.115-201ENST00000636045 103 ntBASIC1.81□□□□□ -2.12
MSH2P43246 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.8□□□□□ -2.12
MSH2P43246 MIR126-201ENST00000362291 85 ntBASIC1.8□□□□□ -2.12
MSH2P43246 RNA5SP363-201ENST00000365072 115 ntBASIC1.8□□□□□ -2.12
MSH2P43246 SNORA22B-201ENST00000383876 138 ntBASIC1.8□□□□□ -2.12
MSH2P43246 MIR934-201ENST00000401241 83 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.8□□□□□ -2.12
MSH2P43246 snoU13.15-201ENST00000459407 104 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AC005908.1-201ENST00000468701 347 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AL163540.1-201ENST00000485382 386 ntBASIC1.8□□□□□ -2.12
MSH2P43246 RPL23AP63-201ENST00000498752 471 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AC025465.3-201ENST00000510570 311 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AC027419.1-201ENST00000522976 328 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AC024995.1-201ENST00000523014 93 ntBASIC1.8□□□□□ -2.12
MSH2P43246 CBX3P4-201ENST00000538909 354 ntBASIC1.8□□□□□ -2.12
MSH2P43246 MIR3171-201ENST00000584270 74 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AC005176.2-201ENST00000596933 147 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AL390123.1-201ENST00000603216 237 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AC005828.6-201ENST00000606610 232 ntBASIC1.8□□□□□ -2.12
MSH2P43246 AL359075.3-201ENST00000613288 217 ntBASIC1.8□□□□□ -2.12
MSH2P43246 U6.73-201ENST00000619194 103 ntBASIC1.8□□□□□ -2.12
MSH2P43246 U6.108-201ENST00000637764 58 ntBASIC1.8□□□□□ -2.12
MSH2P43246 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
MSH2P43246 RNU6-414P-201ENST00000363705 104 ntBASIC1.79□□□□□ -2.12
MSH2P43246 SNORA63D-201ENST00000364359 132 ntBASIC1.79□□□□□ -2.12
MSH2P43246 Y_RNA.243-201ENST00000364481 109 ntBASIC1.79□□□□□ -2.12
MSH2P43246 RNU4-76P-201ENST00000364509 141 ntBASIC1.79□□□□□ -2.12
MSH2P43246 MIR520A-201ENST00000384862 85 ntBASIC1.79□□□□□ -2.12
MSH2P43246 EBAG9P1-201ENST00000418955 543 ntBASIC1.79□□□□□ -2.12
MSH2P43246 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.79□□□□□ -2.12
MSH2P43246 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.79□□□□□ -2.12
MSH2P43246 MRPS10P1-201ENST00000448483 130 ntBASIC1.79□□□□□ -2.12
MSH2P43246 UBL5P3-201ENST00000475112 231 ntBASIC1.79□□□□□ -2.12
MSH2P43246 RNA5SP182-201ENST00000516064 82 ntBASIC1.79□□□□□ -2.12
MSH2P43246 RNU2-12P-201ENST00000517216 168 ntBASIC1.79□□□□□ -2.12
MSH2P43246 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.79□□□□□ -2.12
MSH2P43246 Y_RNA.772-201ENST00000606692 102 ntBASIC1.79□□□□□ -2.12
MSH2P43246 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.79□□□□□ -2.12
MSH2P43246 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
MSH2P43246 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
MSH2P43246 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
MSH2P43246 Y_RNA.101-201ENST00000363154 102 ntBASIC1.78□□□□□ -2.12
MSH2P43246 Y_RNA.230-201ENST00000364348 109 ntBASIC1.78□□□□□ -2.12
MSH2P43246 RNU4-50P-201ENST00000364361 141 ntBASIC1.78□□□□□ -2.12
MSH2P43246 Y_RNA.424-201ENST00000384063 103 ntBASIC1.78□□□□□ -2.12
MSH2P43246 RNA5SP323-201ENST00000391094 133 ntBASIC1.78□□□□□ -2.12
MSH2P43246 Y_RNA.645-201ENST00000391229 102 ntBASIC1.78□□□□□ -2.12
MSH2P43246 MTCYBP6-201ENST00000441810 138 ntBASIC1.78□□□□□ -2.12
MSH2P43246 AC069257.2-201ENST00000441819 155 ntBASIC1.78□□□□□ -2.12
MSH2P43246 RPL36AP21-201ENST00000490372 323 ntBASIC1.78□□□□□ -2.12
MSH2P43246 RNU1-142P-201ENST00000516682 145 ntBASIC1.78□□□□□ -2.12
MSH2P43246 RNU7-128P-201ENST00000517247 62 ntBASIC1.78□□□□□ -2.12
MSH2P43246 AC023157.2-201ENST00000540596 141 ntBASIC1.78□□□□□ -2.12
MSH2P43246 MIR4438-201ENST00000585271 93 ntBASIC1.78□□□□□ -2.12
MSH2P43246 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
MSH2P43246 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.78□□□□□ -2.12
MSH2P43246 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.78□□□□□ -2.13
MSH2P43246 SNORA27.1-201ENST00000362604 124 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms