Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AL078604.3-201ENST00000615580 211 ntBASIC2.36□□□□□ -2.03
HOXD9P28356 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
HOXD9P28356 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
HOXD9P28356 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
HOXD9P28356 RNU6-545P-201ENST00000362681 104 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 RNU6-1272P-201ENST00000362776 107 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 RNU1-51P-201ENST00000365345 176 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 RNA5SP240-201ENST00000365355 128 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 RNU6-47P-201ENST00000383866 107 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 Y_RNA.435-201ENST00000384095 112 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 RNU6-1274P-201ENST00000384557 107 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 RNU6-918P-201ENST00000391219 106 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 MIR300-201ENST00000401138 83 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 AL031003.1-201ENST00000404229 172 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 MIR1294-201ENST00000408503 142 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.35□□□□□ -2.03
HOXD9P28356 HMGN2P9-201ENST00000476875 229 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.35□□□□□ -2.03
HOXD9P28356 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
HOXD9P28356 MIR3684-201ENST00000579779 74 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 AL355297.2-201ENST00000604792 129 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXD9P28356 U6.115-201ENST00000636045 103 ntBASIC2.35□□□□□ -2.03
HOXD9P28356 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXD9P28356 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
HOXD9P28356 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.03
HOXD9P28356 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
HOXD9P28356 SNORD114-7-201ENST00000362520 77 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 RNU6-653P-201ENST00000363074 106 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 RNU6-944P-201ENST00000364023 107 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 RNU6-1305P-201ENST00000364353 104 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 MIR548M-201ENST00000408260 86 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 MIR1185-2-201ENST00000408687 86 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 RNU6-710P-201ENST00000410424 105 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 COX6CP10-201ENST00000416832 224 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 Z82209.1-201ENST00000422141 2135 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 AL161788.1-201ENST00000441805 169 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 Y_RNA.637-201ENST00000459424 114 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 RPS29P21-201ENST00000496272 170 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXD9P28356 RNU5F-4P-201ENST00000516581 114 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 AC136628.3-201ENST00000521868 290 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 AC009127.3-201ENST00000570531 403 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 MIR1273D-201ENST00000577266 86 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 MIR5692C2-201ENST00000577959 77 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 MIR5194-201ENST00000582634 120 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXD9P28356 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXD9P28356 AL008718.3-201ENST00000610217 321 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 AL365265.1-201ENST00000621045 234 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 MIR6766-201ENST00000622641 72 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 AC090517.3-201ENST00000625170 141 ntBASIC2.34□□□□□ -2.03
HOXD9P28356 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.33□□□□□ -2.04
HOXD9P28356 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.33□□□□□ -2.04
HOXD9P28356 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXD9P28356 RNU6-324P-201ENST00000363957 106 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 Y_RNA.262-201ENST00000364641 102 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 RNU1-91P-201ENST00000364746 163 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 RNU6-234P-201ENST00000365229 104 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 MIR1283-1-201ENST00000408494 87 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 MIR1261-201ENST00000408659 82 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXD9P28356 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 RNU6-861P-201ENST00000516745 106 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXD9P28356 AL137100.2-201ENST00000555786 315 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 AC010297.1-201ENST00000623948 149 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 U6.106-201ENST00000636360 105 ntBASIC2.33□□□□□ -2.04
HOXD9P28356 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD9P28356 RNU6-801P-201ENST00000364087 105 ntBASIC2.32□□□□□ -2.04
HOXD9P28356 Y_RNA.233-201ENST00000364407 101 ntBASIC2.32□□□□□ -2.04
HOXD9P28356 AL139095.1-201ENST00000404326 391 ntBASIC2.32□□□□□ -2.04
HOXD9P28356 MTND2P29-201ENST00000438595 412 ntBASIC2.32□□□□□ -2.04
HOXD9P28356 RNU7-14P-201ENST00000459331 62 ntBASIC2.32□□□□□ -2.04
HOXD9P28356 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXD9P28356 RNU6-586P-201ENST00000517265 104 ntBASIC2.32□□□□□ -2.04
HOXD9P28356 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXD9P28356 AC087441.2-201ENST00000529141 262 ntBASIC2.32□□□□□ -2.04
HOXD9P28356 MIR4308-201ENST00000580634 81 ntBASIC2.32□□□□□ -2.04
HOXD9P28356 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD9P28356 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HOXD9P28356 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.31□□□□□ -2.04
HOXD9P28356 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HOXD9P28356 Y_RNA.240-201ENST00000364469 95 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 SNORD31B-201ENST00000364977 69 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 Y_RNA.308-201ENST00000365043 101 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 Y_RNA.368-201ENST00000365547 113 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 MIR95-201ENST00000385072 81 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 RNU4-61P-201ENST00000411243 107 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 BTF3P11-201ENST00000426582 477 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 SUMO1P4-201ENST00000429430 302 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 AL135790.2-201ENST00000437701 267 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 AL392103.1-201ENST00000447000 198 ntBASIC2.31□□□□□ -2.04
HOXD9P28356 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms