Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RNU6-541P-201ENST00000384709 110 ntBASIC0.04□□□□□ -2.4
TPM1P09493 MIR520G-201ENST00000385064 90 ntBASIC0.04□□□□□ -2.4
TPM1P09493 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC0.04□□□□□ -2.4
TPM1P09493 AL392103.1-201ENST00000447000 198 ntBASIC0.04□□□□□ -2.4
TPM1P09493 SNRPGP12-201ENST00000449481 213 ntBASIC0.04□□□□□ -2.4
TPM1P09493 MTCO3P10-201ENST00000455912 772 ntBASIC0.04□□□□□ -2.4
TPM1P09493 MTND1P22-201ENST00000510572 951 ntBASIC0.04□□□□□ -2.4
TPM1P09493 SNORA19.2-201ENST00000516013 114 ntBASIC0.04□□□□□ -2.4
TPM1P09493 RNU7-43P-201ENST00000516554 64 ntBASIC0.04□□□□□ -2.4
TPM1P09493 MIR3684-201ENST00000579779 74 ntBASIC0.04□□□□□ -2.4
TPM1P09493 PIGPP4-201ENST00000584447 307 ntBASIC0.04□□□□□ -2.4
TPM1P09493 MIR18A-201ENST00000362310 71 ntBASIC0.03□□□□□ -2.4
TPM1P09493 RNU6-654P-201ENST00000364373 107 ntBASIC0.03□□□□□ -2.4
TPM1P09493 RNU6-407P-201ENST00000365280 104 ntBASIC0.03□□□□□ -2.4
TPM1P09493 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.03□□□□□ -2.4
TPM1P09493 CALM2P3-201ENST00000400429 449 ntBASIC0.03□□□□□ -2.4
TPM1P09493 RNU7-125P-201ENST00000458760 62 ntBASIC0.03□□□□□ -2.4
TPM1P09493 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC0.03□□□□□ -2.4
TPM1P09493 AC018710.1-201ENST00000506509 158 ntBASIC0.03□□□□□ -2.4
TPM1P09493 AC114811.1-201ENST00000507207 168 ntBASIC0.03□□□□□ -2.4
TPM1P09493 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.03□□□□□ -2.4
TPM1P09493 AL354950.2-201ENST00000617939 290 ntBASIC0.03□□□□□ -2.4
TPM1P09493 AC009248.2-201ENST00000619826 254 ntBASIC0.03□□□□□ -2.4
TPM1P09493 AC092634.7-201ENST00000621022 103 ntBASIC0.03□□□□□ -2.4
TPM1P09493 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
TPM1P09493 SNORD44.1-201ENST00000363202 61 ntBASIC0.02□□□□□ -2.41
TPM1P09493 RNA5SP62-201ENST00000363457 110 ntBASIC0.02□□□□□ -2.41
TPM1P09493 SNORA2B-201ENST00000384583 137 ntBASIC0.02□□□□□ -2.41
TPM1P09493 AC243428.1-201ENST00000421099 264 ntBASIC0.02□□□□□ -2.41
TPM1P09493 AL358934.1-201ENST00000432346 324 ntBASIC0.02□□□□□ -2.41
TPM1P09493 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.02□□□□□ -2.41
TPM1P09493 AL353572.1-201ENST00000442490 417 ntBASIC0.02□□□□□ -2.41
TPM1P09493 RNU6-1038P-201ENST00000516516 104 ntBASIC0.02□□□□□ -2.41
TPM1P09493 RNU6-107P-201ENST00000516643 102 ntBASIC0.02□□□□□ -2.41
TPM1P09493 AC093027.1-201ENST00000546698 429 ntBASIC0.02□□□□□ -2.41
TPM1P09493 UBL5P4-201ENST00000562584 236 ntBASIC0.02□□□□□ -2.41
TPM1P09493 AL162730.1-201ENST00000605734 292 ntBASIC0.02□□□□□ -2.41
TPM1P09493 MIR924-201ENST00000638017 53 ntBASIC0.02□□□□□ -2.41
TPM1P09493 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.01□□□□□ -2.41
TPM1P09493 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
TPM1P09493 SNORA27.1-201ENST00000362604 124 ntBASIC0.01□□□□□ -2.41
TPM1P09493 RNY3P10-201ENST00000384764 102 ntBASIC0.01□□□□□ -2.41
TPM1P09493 MIR15B-201ENST00000385045 98 ntBASIC0.01□□□□□ -2.41
TPM1P09493 MIR516B2-201ENST00000385190 85 ntBASIC0.01□□□□□ -2.41
TPM1P09493 MIR136-201ENST00000385207 82 ntBASIC0.01□□□□□ -2.41
TPM1P09493 RNU6-1132P-201ENST00000459214 107 ntBASIC0.01□□□□□ -2.41
TPM1P09493 RPS3AP17-201ENST00000472594 777 ntBASIC0.01□□□□□ -2.41
TPM1P09493 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.01□□□□□ -2.41
TPM1P09493 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC0.01□□□□□ -2.41
TPM1P09493 AC022523.2-201ENST00000561045 150 ntBASIC0.01□□□□□ -2.41
TPM1P09493 AL136370.1-201ENST00000608166 691 ntBASIC0.01□□□□□ -2.41
TPM1P09493 RMST_2.1-201ENST00000617263 136 ntBASIC0.01□□□□□ -2.41
TPM1P09493 MTCYBP4-201ENST00000401524 249 ntBASIC0□□□□□ -2.41
TPM1P09493 AL137792.2-201ENST00000443484 235 ntBASIC0□□□□□ -2.41
TPM1P09493 RNU6-759P-201ENST00000516740 103 ntBASIC0□□□□□ -2.41
TPM1P09493 AL118558.2-201ENST00000556294 238 ntBASIC0□□□□□ -2.41
TPM1P09493 LARP7P1-201ENST00000605576 316 ntBASIC0□□□□□ -2.41
TPM1P09493 SNORD68-201ENST00000363214 84 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 Y_RNA.378-201ENST00000365652 113 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 MIR1302-7-201ENST00000408841 72 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 RNU6-613P-201ENST00000410412 108 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 RNA5SP511-201ENST00000410487 115 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 RPL30P16-201ENST00000419341 429 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC-0.01□□□□□ -2.41
TPM1P09493 AC005534.2-201ENST00000431047 433 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 MTND1P4-201ENST00000435196 415 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 SNRPGP9-201ENST00000456025 225 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 SCARNA1-201ENST00000517138 166 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC-0.01□□□□□ -2.41
TPM1P09493 RAC1P9-201ENST00000604990 392 ntBASIC-0.01□□□□□ -2.41
TPM1P09493 AC117470.1-201ENST00000381974 330 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 RNU5A-6P-201ENST00000384136 116 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 MIR518A1-201ENST00000385068 85 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 RNU6-1158P-201ENST00000391167 107 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC-0.02□□□□□ -2.41
TPM1P09493 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.02□□□□□ -2.41
TPM1P09493 Y_RNA.654-201ENST00000497848 106 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.02□□□□□ -2.41
TPM1P09493 SNORA18.7-201ENST00000516910 131 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 NTS-203ENST00000551529 801 ntTSL 3 BASIC-0.02□□□□□ -2.41
TPM1P09493 AL078603.1-201ENST00000603824 313 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 MIR4315-1-201ENST00000636800 73 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 MIR4315-2-201ENST00000640925 73 ntBASIC-0.02□□□□□ -2.41
TPM1P09493 RNU6-369P-201ENST00000362515 102 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 RNU6-117P-201ENST00000365415 107 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC-0.03□□□□□ -2.41
TPM1P09493 MTND2P18-201ENST00000419962 1030 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 ELOCP24-201ENST00000456370 334 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC-0.03□□□□□ -2.41
TPM1P09493 MTND3P3-201ENST00000505004 126 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC-0.03□□□□□ -2.41
TPM1P09493 RNU6-1332P-201ENST00000516666 104 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 AC009094.1-201ENST00000564443 426 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 MIR3612-201ENST00000579753 87 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 AC109347.2-201ENST00000610220 349 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 AL355073.2-201ENST00000612106 557 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 AC127459.3-201ENST00000624328 466 ntBASIC-0.03□□□□□ -2.41
TPM1P09493 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC-0.04□□□□□ -2.42
TPM1P09493 Y_RNA.168-201ENST00000363740 102 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms