Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU1-29P-201ENST00000606574 126 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC022960.3-201ENST00000619794 441 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC134878.1-201ENST00000619901 243 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 AC138649.3-201ENST00000622154 254 ntBASIC-1.37□□□□□ -2.63
CCDC88BA6NC98 RNU6-289P-201ENST00000364093 107 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 Y_RNA.447-201ENST00000384184 113 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 MIR452-201ENST00000385020 85 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 MIR204-201ENST00000385200 110 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 TRIM60P10Y-201ENST00000425589 751 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 AC004386.2-201ENST00000441858 148 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 MTND2P6-201ENST00000455337 1030 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 PRDX4P1-201ENST00000507189 574 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 RNA5SP66-201ENST00000517178 101 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 MTND2P38-201ENST00000522536 667 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 AC006600.1-201ENST00000572529 153 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 AL355375.2-201ENST00000574825 175 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 MIR4666A-201ENST00000580160 79 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 AL359547.2-201ENST00000615810 418 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 Six3os1_7.1-201ENST00000621512 201 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 snoZ196.1-201ENST00000625269 89 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 U4.7-201ENST00000638126 106 ntBASIC-1.38□□□□□ -2.63
CCDC88BA6NC98 MTND4P9-201ENST00000507819 1346 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 RNU5B-2P-201ENST00000363036 113 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 RNU6-116P-201ENST00000384042 109 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 RNU6-24P-201ENST00000384440 107 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 SNORA26.5-201ENST00000391215 123 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 RNU2-54P-201ENST00000410299 190 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 RNU6-123P-201ENST00000516163 102 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 AC138749.4-201ENST00000563970 127 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 FGF7P1-201ENST00000582820 288 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 AC121247.2-201ENST00000604776 136 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 AC005520.5-201ENST00000613926 164 ntBASIC-1.39□□□□□ -2.63
CCDC88BA6NC98 MTND1P14-201ENST00000427400 950 ntBASIC-1.4□□□□□ -2.63
CCDC88BA6NC98 MTND2P20-201ENST00000440805 661 ntBASIC-1.4□□□□□ -2.63
CCDC88BA6NC98 RNU6-377P-201ENST00000515965 102 ntBASIC-1.4□□□□□ -2.63
CCDC88BA6NC98 RNA5SP169-201ENST00000517268 117 ntBASIC-1.4□□□□□ -2.63
CCDC88BA6NC98 AC018448.1-201ENST00000552843 316 ntBASIC-1.4□□□□□ -2.63
CCDC88BA6NC98 SNORD92-201ENST00000585078 85 ntBASIC-1.4□□□□□ -2.63
CCDC88BA6NC98 AL139022.2-201ENST00000606934 443 ntBASIC-1.4□□□□□ -2.63
CCDC88BA6NC98 AC144521.1-201ENST00000607148 956 ntBASIC-1.4□□□□□ -2.63
CCDC88BA6NC98 MIR215-201ENST00000384858 110 ntBASIC-1.41□□□□□ -2.63
CCDC88BA6NC98 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC-1.41□□□□□ -2.63
CCDC88BA6NC98 AC023632.1-201ENST00000518463 375 ntBASIC-1.41□□□□□ -2.63
CCDC88BA6NC98 AC068587.5-201ENST00000528506 175 ntBASIC-1.41□□□□□ -2.63
CCDC88BA6NC98 uc_338.19-201ENST00000616808 99 ntBASIC-1.41□□□□□ -2.63
CCDC88BA6NC98 MPP6-209ENST00000625307 126 ntTSL 5 BASIC-1.41□□□□□ -2.63
CCDC88BA6NC98 Y_RNA.504-201ENST00000384481 104 ntBASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 FCF1P9-201ENST00000412546 282 ntBASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 RNU6-1236P-201ENST00000517080 99 ntBASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 MIR4677-201ENST00000584153 80 ntBASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 OR4H6P-202ENST00000603819 340 ntBASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 AC006441.5-201ENST00000612680 209 ntBASIC-1.42□□□□□ -2.64
CCDC88BA6NC98 RNU6-1229P-201ENST00000364295 107 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 RNA5SP192-201ENST00000364404 120 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 MTND4P24-201ENST00000424002 397 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 MTATP6P26-201ENST00000445926 662 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 RNU6-221P-201ENST00000459541 99 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 MIR548AC-201ENST00000585049 88 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 AC018462.2-201ENST00000605375 395 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 U7.6-201ENST00000610841 64 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 AC084368.1-201ENST00000620935 65 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 SNORA1B-201ENST00000362535 133 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 SNORD114-25-201ENST00000363742 72 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 RNU4-36P-201ENST00000364294 144 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 RNU6-946P-201ENST00000383878 107 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 SNORA36A-201ENST00000384221 132 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 MT-TN-201ENST00000387400 73 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 AC243428.1-201ENST00000421099 264 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 AC012306.1-201ENST00000423267 114 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 RPL23AP75-201ENST00000491601 451 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 AC026414.1-201ENST00000504046 698 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 RN7SKP19-201ENST00000516016 252 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 RNU6-150P-201ENST00000516237 95 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 RNA5SP47-201ENST00000517230 109 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 MTND1P8-201ENST00000571424 950 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 MIR3146-201ENST00000580367 79 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 MIR4499-201ENST00000584834 69 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 AC012467.1-201ENST00000607740 256 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 TCL6_2.1-201ENST00000615162 119 ntBASIC-1.43□□□□□ -2.64
CCDC88BA6NC98 U3.4-201ENST00000363352 213 ntBASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 RNU4-16P-201ENST00000364737 141 ntBASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 MIR578-201ENST00000384828 96 ntBASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 RPL23AP30-201ENST00000432419 501 ntBASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 AC009237.7-201ENST00000447357 229 ntBASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 SLC2A13P1-201ENST00000531560 322 ntBASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-1.44□□□□□ -2.64
CCDC88BA6NC98 AC016597.2-201ENST00000613256 341 ntBASIC-1.44□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms