Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.08□□□□□ -2.4
SCN3AQ9NY46 AL133217.1-201ENST00000450980 425 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.08□□□□□ -2.4
SCN3AQ9NY46 HAR1A.1-201ENST00000459583 118 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RPL23AP75-201ENST00000491601 451 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNU6-189P-201ENST00000516120 101 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 SNORA18.6-201ENST00000516792 115 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 SCARNA1-201ENST00000517138 166 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 MIR8076-201ENST00000611401 83 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 MIR6755-201ENST00000619993 66 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 AC092634.7-201ENST00000621022 103 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 SNORA25.3-201ENST00000363205 127 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNU6-727P-201ENST00000363592 107 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNU5F-3P-201ENST00000363767 117 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNU6-456P-201ENST00000384493 107 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 MIR573-201ENST00000384964 99 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 MIR520G-201ENST00000385064 90 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 MIR520H-201ENST00000385126 88 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNA5SP222-201ENST00000411039 105 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 AL008987.1-201ENST00000415528 237 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.08□□□□□ -2.4
SCN3AQ9NY46 AL009048.1-201ENST00000450437 298 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 AC108740.1-201ENST00000498629 225 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 SNORA19.2-201ENST00000516013 114 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNU6-430P-201ENST00000517078 107 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNU6-1096P-201ENST00000517089 102 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 MTCO2P4-201ENST00000517968 247 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 AC027419.1-201ENST00000522976 328 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 uc_338.22-201ENST00000622722 187 ntBASIC0.08□□□□□ -2.4
SCN3AQ9NY46 RNU6-873P-201ENST00000363833 107 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 RNY4P34-201ENST00000364779 95 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 RNU4-45P-201ENST00000365469 141 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 Y_RNA.518-201ENST00000384552 113 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.07□□□□□ -2.4
SCN3AQ9NY46 SCARNA18-201ENST00000459004 134 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 RNU6-863P-201ENST00000515989 104 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 RNA5SP134-201ENST00000516492 96 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 RNU7-128P-201ENST00000517247 62 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 MTND1P5-201ENST00000517906 940 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 RNU6-323P-201ENST00000521915 107 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 AC104383.1-201ENST00000530297 370 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 HIF1AP1-201ENST00000553642 175 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 AC068790.2-201ENST00000602601 557 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 AP001506.1-201ENST00000615444 211 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 AF246928.1-201ENST00000623768 87 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 AC007671.2-201ENST00000637344 619 ntBASIC0.07□□□□□ -2.4
SCN3AQ9NY46 RNU6-1297P-201ENST00000384415 104 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.06□□□□□ -2.4
SCN3AQ9NY46 RPL23AP54-201ENST00000495129 419 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 AC005178.1-201ENST00000508392 440 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 RNU6-1110P-201ENST00000516462 101 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 RNU6-612P-201ENST00000516909 102 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 UBL5P4-201ENST00000562584 236 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.06□□□□□ -2.4
SCN3AQ9NY46 CPDP1-201ENST00000579660 283 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 AC120024.3-201ENST00000603167 156 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 RNU6-1303P-201ENST00000364841 107 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 MIR1827-201ENST00000408549 66 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 RNU2-9P-201ENST00000410194 145 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.06□□□□□ -2.4
SCN3AQ9NY46 MTCO3P10-201ENST00000455912 772 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 TRBVB-201ENST00000477100 408 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.06□□□□□ -2.4
SCN3AQ9NY46 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.06□□□□□ -2.4
SCN3AQ9NY46 SCOCP1-201ENST00000554676 349 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 AC087683.1-201ENST00000591187 441 ntBASIC0.06□□□□□ -2.4
SCN3AQ9NY46 FER-210ENST00000628534 558 ntTSL 5 BASIC0.06□□□□□ -2.4
SCN3AQ9NY46 MTND5P16-201ENST00000460269 1703 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 MIR18A-201ENST00000362310 71 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 SNORD68-201ENST00000363214 84 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 RNU6-1214P-201ENST00000363650 109 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 RNA5SP494-201ENST00000410653 129 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC0.05□□□□□ -2.4
SCN3AQ9NY46 AC008134.1-201ENST00000420943 193 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 PIGPP3-201ENST00000425307 415 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 USP9YP29-201ENST00000445112 563 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 ZNF114P1-201ENST00000453500 292 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 RNU6-58P-201ENST00000517143 103 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 AL358944.1-201ENST00000528537 144 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
SCN3AQ9NY46 AC022523.2-201ENST00000561045 150 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 MIR5190-201ENST00000581537 80 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.05□□□□□ -2.4
SCN3AQ9NY46 AC008873.1-201ENST00000625051 138 ntBASIC0.05□□□□□ -2.4
SCN3AQ9NY46 RNU6-137P-201ENST00000363680 108 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 AL049545.1-201ENST00000401856 572 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 RNU6-613P-201ENST00000410412 108 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.04□□□□□ -2.4
SCN3AQ9NY46 RNU7-43P-201ENST00000516554 64 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 RNA5SP285-201ENST00000516619 119 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 RNU6-341P-201ENST00000516973 96 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.04□□□□□ -2.4
SCN3AQ9NY46 AC023157.2-201ENST00000540596 141 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 MIR4636-201ENST00000582271 80 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 AC017083.3-201ENST00000609955 700 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 MIR6086-201ENST00000638065 55 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 SNORD87-201ENST00000364849 89 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 RNU6-35P-201ENST00000384530 107 ntBASIC0.04□□□□□ -2.4
SCN3AQ9NY46 MIR122-201ENST00000385044 85 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 222.9 ms