Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 Y_RNA.683-201ENST00000516508 93 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 RNU6-165P-201ENST00000517170 99 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 MIR4421-201ENST00000578133 69 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 AC022432.1-201ENST00000595739 310 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 AC100812.1-201ENST00000607622 580 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 RN7SL853P-201ENST00000617250 223 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.364-201ENST00000365532 101 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.390-201ENST00000383932 102 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 SNORA20B-201ENST00000384220 132 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 RNU6-440P-201ENST00000390882 105 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 RNU6-1304P-201ENST00000411374 106 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 USMG5P1-201ENST00000425964 177 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 RPS29P28-201ENST00000446439 141 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 AC074290.1-201ENST00000448883 135 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 RNU7-34P-201ENST00000459394 64 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 AC079140.2-201ENST00000506193 142 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 RNU7-99P-201ENST00000516271 62 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.691-201ENST00000516611 103 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 RNU1-142P-201ENST00000516682 145 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.706-201ENST00000516933 99 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 SUMO2P16-201ENST00000519475 264 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 CYP3A52P-201ENST00000563326 91 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 AC055872.1-201ENST00000570978 278 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 AC090617.3-201ENST00000573670 475 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 AC011712.1-201ENST00000588959 234 ntBASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC54Q8NEL0 RNU6-845P-201ENST00000362578 103 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.72-201ENST00000362894 103 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 RNU1-22P-201ENST00000363334 158 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 SNORD81.2-201ENST00000365153 76 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.358-201ENST00000365491 99 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.474-201ENST00000384341 102 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.482-201ENST00000384377 111 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 MIR513A1-201ENST00000385138 129 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 MT-TL1-201ENST00000386347 75 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 RNA5SP323-201ENST00000391094 133 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 SNORA75.4-201ENST00000391278 119 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 COX6CP10-201ENST00000416832 224 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 AL591704.2-201ENST00000421658 181 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 MTND1P2-201ENST00000430604 821 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 MRPS10P1-201ENST00000448483 130 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 RPL30P7-201ENST00000479312 323 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 AC010469.2-201ENST00000496412 480 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 AC116353.2-201ENST00000505332 712 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.708-201ENST00000516950 96 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 AC090821.2-201ENST00000523552 176 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 AL512310.8-201ENST00000550183 120 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 AL121579.1-201ENST00000555129 305 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 MIR4438-201ENST00000585271 93 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 MIR1244-1-201ENST00000612829 85 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 AC087588.2-201ENST00000617667 426 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 MIR1244-3-201ENST00000635744 85 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 MIR1244-2-201ENST00000636449 85 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 MIR1244-4-202ENST00000636813 85 ntBASIC1.04□□□□□ -2.24
CCDC54Q8NEL0 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 RNA5SP327-201ENST00000362494 101 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.124-201ENST00000363339 93 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.160-201ENST00000363677 92 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 RNU6-593P-201ENST00000364716 112 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 RNU6-767P-201ENST00000384132 107 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 RPL37P10-201ENST00000412884 288 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AC245047.3-201ENST00000429428 127 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 FTH1P12-201ENST00000432137 551 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AC009474.2-201ENST00000451383 136 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AL133373.1-201ENST00000497098 94 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AC097462.1-201ENST00000514125 324 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AL137100.2-201ENST00000555786 315 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AC004584.2-201ENST00000570407 410 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 MIR4303-201ENST00000581299 66 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AC091178.2-201ENST00000584401 117 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AC016727.1-205ENST00000605437 569 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AC092794.1-201ENST00000612734 582 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 AC099654.5-201ENST00000636479 350 ntBASIC1.03□□□□□ -2.24
CCDC54Q8NEL0 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.03□□□□□ -2.25
CCDC54Q8NEL0 RNU6-1301P-201ENST00000362724 104 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 RNU1-17P-201ENST00000363022 152 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 RNU6-99P-201ENST00000364721 107 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 MRPL42P3-201ENST00000401492 326 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 MIR1285-1-201ENST00000408593 84 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 Y_RNA.646-201ENST00000410980 101 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 RBMX2P4-201ENST00000441256 376 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 AC107399.1-201ENST00000451226 265 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 RNU7-87P-201ENST00000459343 62 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 AC092991.1-201ENST00000477176 376 ntBASIC1.02□□□□□ -2.25
CCDC54Q8NEL0 RNU6-966P-201ENST00000516479 104 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms