Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MIR548AO-201ENST00000579992 96 ntBASIC-0.09□□□□□ -2.42
FOXA3P55318 AC120024.3-201ENST00000603167 156 ntBASIC-0.09□□□□□ -2.42
FOXA3P55318 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-0.09□□□□□ -2.42
FOXA3P55318 FER-210ENST00000628534 558 ntTSL 5 BASIC-0.09□□□□□ -2.42
FOXA3P55318 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC-0.1□□□□□ -2.42
FOXA3P55318 AC073544.1-201ENST00000600110 1595 ntBASIC-0.1□□□□□ -2.42
FOXA3P55318 RNU6-500P-201ENST00000362349 107 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 SNORD114-5-201ENST00000362928 70 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 SNORA42.1-201ENST00000363515 137 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 SNORD14.1-201ENST00000365609 90 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 RNU6-376P-201ENST00000384731 106 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 MIR521-1-201ENST00000384902 87 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 MIR452-201ENST00000385020 85 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 MIR1302-7-201ENST00000408841 72 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 MTCO3P19-201ENST00000415864 321 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.1□□□□□ -2.43
FOXA3P55318 AC015818.7-201ENST00000428754 109 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 AC005534.2-201ENST00000431047 433 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 AC087499.7-201ENST00000441958 109 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 AL392103.1-201ENST00000447000 198 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 MTND4P18-201ENST00000447010 465 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 AL009048.1-201ENST00000450437 298 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 U8.21-201ENST00000459536 136 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 RNU6-863P-201ENST00000515989 104 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 RNU6-977P-201ENST00000516411 103 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 SNORA62.5-201ENST00000516634 120 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 RNU11-2P-201ENST00000516898 142 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC-0.1□□□□□ -2.43
FOXA3P55318 MIR3941-201ENST00000582572 103 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 AC010620.1-201ENST00000601088 1102 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 AC104408.1-201ENST00000605241 170 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 AC006566.1-201ENST00000608943 513 ntBASIC-0.1□□□□□ -2.43
FOXA3P55318 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC-0.11□□□□□ -2.43
FOXA3P55318 SNORD68-201ENST00000363214 84 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 Y_RNA.122-201ENST00000363331 96 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 RNY1-201ENST00000364228 113 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC-0.11□□□□□ -2.43
FOXA3P55318 RNU6-245P-201ENST00000384020 107 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 RNU6-456P-201ENST00000384493 107 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 RNU6-136P-201ENST00000384663 107 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 RNU6-606P-201ENST00000384721 111 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 MIR562-201ENST00000384894 95 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 RNU2-9P-201ENST00000410194 145 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 AL390729.2-201ENST00000416137 156 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC-0.11□□□□□ -2.43
FOXA3P55318 AL139396.1-201ENST00000421137 167 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 MRPS10P2-201ENST00000431226 381 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 SEPT7P4-201ENST00000437076 306 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 PCNPP5-201ENST00000452246 481 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 OFD1P4Y-201ENST00000455273 1179 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 snoU13.21-201ENST00000459368 105 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 RPS3AP17-201ENST00000472594 777 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-0.11□□□□□ -2.43
FOXA3P55318 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC-0.11□□□□□ -2.43
FOXA3P55318 AC010598.1-201ENST00000510378 103 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 RNA5SP227-201ENST00000516184 113 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 RNA5SP54-201ENST00000516951 92 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 AL137161.1-201ENST00000532231 390 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 ELOCP32-201ENST00000548625 324 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 NDUFAF4P1-201ENST00000559425 519 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC-0.11□□□□□ -2.43
FOXA3P55318 RPL23AP91-201ENST00000569211 455 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 IST1-227ENST00000626438 126 ntTSL 5 BASIC-0.11□□□□□ -2.43
FOXA3P55318 MTND4P12-201ENST00000498999 1377 ntBASIC-0.11□□□□□ -2.43
FOXA3P55318 RNU6-873P-201ENST00000363833 107 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 RNA5SP48-201ENST00000363969 126 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 RNU6-407P-201ENST00000365280 104 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 RNU6-282P-201ENST00000365357 103 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 SNORA20B-201ENST00000384220 132 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 RNU6-903P-201ENST00000391270 109 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.12□□□□□ -2.43
FOXA3P55318 RNU2-29P-201ENST00000410423 189 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.12□□□□□ -2.43
FOXA3P55318 AC009961.2-201ENST00000435771 251 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.12□□□□□ -2.43
FOXA3P55318 AL359672.1-201ENST00000442302 409 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 GMFBP1-201ENST00000467831 427 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 AC091179.3-201ENST00000474761 144 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 RNU6-107P-201ENST00000516643 102 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 AC091144.1-201ENST00000519573 138 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC-0.12□□□□□ -2.43
FOXA3P55318 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC-0.12□□□□□ -2.43
FOXA3P55318 AC018645.2-201ENST00000609151 472 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 AL355073.2-201ENST00000612106 557 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 AC090517.2-201ENST00000614966 680 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 MIR7844-201ENST00000616161 122 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 AC006435.5-201ENST00000624486 112 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 AC027279.3-201ENST00000625055 122 ntBASIC-0.12□□□□□ -2.43
FOXA3P55318 SNORD118-201ENST00000363593 134 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 Y_RNA.184-201ENST00000363884 108 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 MIR136-201ENST00000385207 82 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 AL049545.1-201ENST00000401856 572 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 AC243428.1-201ENST00000421099 264 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC-0.13□□□□□ -2.43
FOXA3P55318 NDUFA5P4-201ENST00000436704 385 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 Z82188.1-201ENST00000436709 154 ntBASIC-0.13□□□□□ -2.43
FOXA3P55318 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.13□□□□□ -2.43
FOXA3P55318 AC018710.1-201ENST00000506509 158 ntBASIC-0.13□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms