Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.11□□□□□ -2.23
MSH6P52701 COX6CP10-201ENST00000416832 224 ntBASIC1.11□□□□□ -2.23
MSH6P52701 EIF1P1-201ENST00000421436 341 ntBASIC1.11□□□□□ -2.23
MSH6P52701 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.11□□□□□ -2.23
MSH6P52701 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.11□□□□□ -2.23
MSH6P52701 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.11□□□□□ -2.23
MSH6P52701 NDUFB4P10-201ENST00000452541 359 ntBASIC1.11□□□□□ -2.23
MSH6P52701 HMGN1P12-201ENST00000499125 195 ntBASIC1.11□□□□□ -2.23
MSH6P52701 ACA59.1-201ENST00000515966 143 ntBASIC1.11□□□□□ -2.23
MSH6P52701 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.11□□□□□ -2.23
MSH6P52701 AC109635.3-201ENST00000529536 185 ntBASIC1.11□□□□□ -2.23
MSH6P52701 AK6P2-201ENST00000549020 471 ntBASIC1.11□□□□□ -2.23
MSH6P52701 AC027288.2-201ENST00000553028 243 ntBASIC1.11□□□□□ -2.23
MSH6P52701 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.11□□□□□ -2.23
MSH6P52701 AC124303.1-201ENST00000605703 360 ntBASIC1.11□□□□□ -2.23
MSH6P52701 AL078604.3-201ENST00000615580 211 ntBASIC1.11□□□□□ -2.23
MSH6P52701 AC015540.1-201ENST00000615828 501 ntBASIC1.11□□□□□ -2.23
MSH6P52701 SNORA22-201ENST00000383907 134 ntBASIC1.1□□□□□ -2.23
MSH6P52701 SNORA22C-201ENST00000384614 134 ntBASIC1.1□□□□□ -2.23
MSH6P52701 MIR618-201ENST00000385287 98 ntBASIC1.1□□□□□ -2.23
MSH6P52701 MRPL35P1-201ENST00000404272 572 ntBASIC1.1□□□□□ -2.23
MSH6P52701 MIR1185-2-201ENST00000408687 86 ntBASIC1.1□□□□□ -2.23
MSH6P52701 RNU6-373P-201ENST00000411247 98 ntBASIC1.1□□□□□ -2.23
MSH6P52701 AC008134.1-201ENST00000420943 193 ntBASIC1.1□□□□□ -2.23
MSH6P52701 AL135790.2-201ENST00000437701 267 ntBASIC1.1□□□□□ -2.23
MSH6P52701 MTATP6P26-201ENST00000445926 662 ntBASIC1.1□□□□□ -2.23
MSH6P52701 RNU1-117P-201ENST00000517041 158 ntBASIC1.1□□□□□ -2.23
MSH6P52701 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.1□□□□□ -2.23
MSH6P52701 MIR4709-201ENST00000577272 72 ntBASIC1.1□□□□□ -2.23
MSH6P52701 AC097065.2-201ENST00000608159 533 ntBASIC1.1□□□□□ -2.23
MSH6P52701 MIR6835-201ENST00000621552 64 ntBASIC1.1□□□□□ -2.23
MSH6P52701 Y_RNA.319-201ENST00000365138 92 ntBASIC1.09□□□□□ -2.23
MSH6P52701 RNU6-596P-201ENST00000365395 98 ntBASIC1.09□□□□□ -2.23
MSH6P52701 RNU6-159P-201ENST00000391080 106 ntBASIC1.09□□□□□ -2.23
MSH6P52701 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.09□□□□□ -2.23
MSH6P52701 AC016907.1-201ENST00000419483 435 ntBASIC1.09□□□□□ -2.23
MSH6P52701 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.09□□□□□ -2.23
MSH6P52701 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.09□□□□□ -2.23
MSH6P52701 RPL30P10-201ENST00000488148 337 ntBASIC1.09□□□□□ -2.23
MSH6P52701 TPRKBP2-201ENST00000565969 475 ntBASIC1.09□□□□□ -2.23
MSH6P52701 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.09□□□□□ -2.23
MSH6P52701 MIR3942-201ENST00000585264 109 ntBASIC1.09□□□□□ -2.23
MSH6P52701 AC009248.2-201ENST00000619826 254 ntBASIC1.09□□□□□ -2.23
MSH6P52701 AC009033.1-201ENST00000624279 431 ntBASIC1.09□□□□□ -2.23
MSH6P52701 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.09□□□□□ -2.23
MSH6P52701 MTND4P12-201ENST00000498999 1377 ntBASIC1.09□□□□□ -2.23
MSH6P52701 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.09□□□□□ -2.24
MSH6P52701 U3.8-201ENST00000363675 217 ntBASIC1.08□□□□□ -2.24
MSH6P52701 RNU6-873P-201ENST00000363833 107 ntBASIC1.08□□□□□ -2.24
MSH6P52701 SNORD87-201ENST00000364849 89 ntBASIC1.08□□□□□ -2.24
MSH6P52701 Y_RNA.436-201ENST00000384097 102 ntBASIC1.08□□□□□ -2.24
MSH6P52701 RNA5SP109-201ENST00000391010 116 ntBASIC1.08□□□□□ -2.24
MSH6P52701 AL606517.2-201ENST00000442855 241 ntBASIC1.08□□□□□ -2.24
MSH6P52701 RPL30P7-201ENST00000479312 323 ntBASIC1.08□□□□□ -2.24
MSH6P52701 RNU1-142P-201ENST00000516682 145 ntBASIC1.08□□□□□ -2.24
MSH6P52701 RAB11AP2-201ENST00000545905 639 ntBASIC1.08□□□□□ -2.24
MSH6P52701 AC090617.10-201ENST00000624308 134 ntBASIC1.08□□□□□ -2.24
MSH6P52701 Y_RNA.9-201ENST00000362354 101 ntBASIC1.08□□□□□ -2.24
MSH6P52701 RNU6-280P-201ENST00000364145 104 ntBASIC1.08□□□□□ -2.24
MSH6P52701 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.08□□□□□ -2.24
MSH6P52701 Y_RNA.554-201ENST00000384672 102 ntBASIC1.08□□□□□ -2.24
MSH6P52701 RNU6-541P-201ENST00000384709 110 ntBASIC1.08□□□□□ -2.24
MSH6P52701 RNA5SP323-201ENST00000391094 133 ntBASIC1.08□□□□□ -2.24
MSH6P52701 AC243428.1-201ENST00000421099 264 ntBASIC1.08□□□□□ -2.24
MSH6P52701 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.08□□□□□ -2.24
MSH6P52701 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.08□□□□□ -2.24
MSH6P52701 RPS26P45-201ENST00000471748 340 ntBASIC1.08□□□□□ -2.24
MSH6P52701 AC103851.1-201ENST00000506833 274 ntBASIC1.08□□□□□ -2.24
MSH6P52701 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.08□□□□□ -2.24
MSH6P52701 RNU6-864P-201ENST00000516256 108 ntBASIC1.08□□□□□ -2.24
MSH6P52701 AC036111.3-201ENST00000526389 112 ntBASIC1.08□□□□□ -2.24
MSH6P52701 MIR3937-201ENST00000580135 106 ntBASIC1.08□□□□□ -2.24
MSH6P52701 7SK.7-201ENST00000603504 247 ntBASIC1.08□□□□□ -2.24
MSH6P52701 AL359075.3-201ENST00000613288 217 ntBASIC1.08□□□□□ -2.24
MSH6P52701 SNX2P2-201ENST00000424553 323 ntBASIC1.07□□□□□ -2.24
MSH6P52701 MTATP6P13-201ENST00000438531 667 ntBASIC1.07□□□□□ -2.24
MSH6P52701 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.07□□□□□ -2.24
MSH6P52701 SNORA31.10-201ENST00000516482 106 ntBASIC1.07□□□□□ -2.24
MSH6P52701 FRG2DP-202ENST00000566967 323 ntBASIC1.07□□□□□ -2.24
MSH6P52701 EIF1P4-201ENST00000572664 335 ntBASIC1.07□□□□□ -2.24
MSH6P52701 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.07□□□□□ -2.24
MSH6P52701 AL929325.1-201ENST00000603096 117 ntBASIC1.07□□□□□ -2.24
MSH6P52701 AC022217.4-201ENST00000604389 163 ntBASIC1.07□□□□□ -2.24
MSH6P52701 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.07□□□□□ -2.24
MSH6P52701 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
MSH6P52701 RNU6-1123P-201ENST00000362347 106 ntBASIC1.06□□□□□ -2.24
MSH6P52701 RNU6-623P-201ENST00000363143 105 ntBASIC1.06□□□□□ -2.24
MSH6P52701 SNORD114-2-201ENST00000363953 78 ntBASIC1.06□□□□□ -2.24
MSH6P52701 RNU6-950P-201ENST00000384651 107 ntBASIC1.06□□□□□ -2.24
MSH6P52701 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.06□□□□□ -2.24
MSH6P52701 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.06□□□□□ -2.24
MSH6P52701 AC091179.3-201ENST00000474761 144 ntBASIC1.06□□□□□ -2.24
MSH6P52701 RNU7-175P-201ENST00000515915 61 ntBASIC1.06□□□□□ -2.24
MSH6P52701 RNU6-1088P-201ENST00000516850 104 ntBASIC1.06□□□□□ -2.24
MSH6P52701 RNU6-1314P-201ENST00000517139 104 ntBASIC1.06□□□□□ -2.24
MSH6P52701 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.06□□□□□ -2.24
MSH6P52701 UBL5P4-201ENST00000562584 236 ntBASIC1.06□□□□□ -2.24
MSH6P52701 MIR4273-201ENST00000582824 84 ntBASIC1.06□□□□□ -2.24
MSH6P52701 AC021506.2-201ENST00000612354 169 ntBASIC1.06□□□□□ -2.24
MSH6P52701 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms