Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 CST2P1-201ENST00000425770 87 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 RPS27P22-201ENST00000478056 241 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 RPL23AP63-201ENST00000498752 471 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 AC074133.1-201ENST00000515696 183 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 RNA5SP182-201ENST00000516064 82 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 RNA5SP437-201ENST00000517249 129 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 CYCSP23-201ENST00000519781 313 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 DEFB122-202ENST00000569013 197 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 AC055872.1-201ENST00000570978 278 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 AL080274.1-201ENST00000605565 220 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 AL353149.1-201ENST00000610667 244 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 AC007485.1-201ENST00000616755 206 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 MIR4272-201ENST00000635924 64 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 MIR3674-201ENST00000636576 68 ntBASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
NKX6-3A6NJ46 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AL356292.1-201ENST00000283110 373 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 Y_RNA.39-201ENST00000362620 98 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 Y_RNA.61-201ENST00000362835 102 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 RNU6-1019P-201ENST00000364424 107 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 SNORA16.1-201ENST00000364597 132 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 Y_RNA.394-201ENST00000383942 103 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 RNU6-296P-201ENST00000384608 107 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 MIR520A-201ENST00000384862 85 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 MIR764-201ENST00000390811 85 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 MTND1P14-201ENST00000427400 950 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AC073910.1-201ENST00000445047 438 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AC010469.2-201ENST00000496412 480 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AL163195.1-201ENST00000496941 348 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 RNU6-976P-201ENST00000516086 111 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 RNU4-77P-201ENST00000516692 156 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 MIR4659A-201ENST00000580269 81 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 SNRPGP19-201ENST00000603826 189 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AC090971.5-201ENST00000621102 293 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AC090574.1-201ENST00000623186 233 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 U6.92-201ENST00000636464 89 ntBASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.55□□□□□ -2.16
NKX6-3A6NJ46 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 Y_RNA.31-201ENST00000362574 102 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 RNU6-454P-201ENST00000364292 107 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 RNU6-407P-201ENST00000365280 104 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 SNORA4.2-201ENST00000365313 147 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 SNORA20B-201ENST00000384220 132 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 RNY1P14-201ENST00000384426 108 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 RNA5SP109-201ENST00000391010 116 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 SNORD78.2-201ENST00000391076 69 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 SNORA26.9-201ENST00000391322 122 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 AC009310.1-201ENST00000414414 451 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 AL591806.2-201ENST00000433122 173 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 HSPE1P21-201ENST00000438283 308 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 HSPE1P9-201ENST00000440046 311 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 AC007677.1-201ENST00000445757 515 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 RNU1-142P-201ENST00000516682 145 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 RNU6-295P-201ENST00000516901 104 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 MIR4524B-201ENST00000581569 115 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 MIR4713-201ENST00000582691 75 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 VN1R91P-201ENST00000594377 169 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 AC004467.1-201ENST00000615678 330 ntBASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
NKX6-3A6NJ46 Y_RNA.252-201ENST00000364556 101 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 SNORA72.2-201ENST00000365028 127 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 Y_RNA.431-201ENST00000384086 102 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 RNY3P4-201ENST00000384428 101 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 AL355796.1-201ENST00000406706 323 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 AL160004.2-201ENST00000432935 350 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 FCF1P4-201ENST00000448326 183 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 AC107393.1-201ENST00000512403 346 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 GNAI2P1-201ENST00000541815 315 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 AL137100.2-201ENST00000555786 315 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 AC110588.1-201ENST00000559699 137 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 AC022254.1-201ENST00000567857 235 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 MIR3618-201ENST00000580330 88 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 MIR5188-201ENST00000583467 113 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 MIR4438-201ENST00000585271 93 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 SNORD58B-201ENST00000607313 66 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 MIR6845-201ENST00000613182 61 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 AL359075.3-201ENST00000613288 217 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 uc_338.22-201ENST00000622722 187 ntBASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.53□□□□□ -2.16
NKX6-3A6NJ46 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.52□□□□□ -2.17
NKX6-3A6NJ46 RNA5SP432-201ENST00000362480 116 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms