Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 Y_RNA.683-201ENST00000516508 93 ntBASIC2.22□□□□□ -2.05
LDB3O75112 RNU6-182P-201ENST00000516970 105 ntBASIC2.22□□□□□ -2.05
LDB3O75112 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.22□□□□□ -2.05
LDB3O75112 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.22□□□□□ -2.05
LDB3O75112 AC005176.2-201ENST00000596933 147 ntBASIC2.22□□□□□ -2.05
LDB3O75112 AC022441.3-201ENST00000605737 136 ntBASIC2.22□□□□□ -2.05
LDB3O75112 AC067747.1-201ENST00000608026 250 ntBASIC2.22□□□□□ -2.05
LDB3O75112 U4atac.1-201ENST00000618345 95 ntBASIC2.22□□□□□ -2.05
LDB3O75112 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.22□□□□□ -2.05
LDB3O75112 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.21□□□□□ -2.06
LDB3O75112 RNU5F-3P-201ENST00000363767 117 ntBASIC2.21□□□□□ -2.06
LDB3O75112 RNU6-682P-201ENST00000363843 106 ntBASIC2.21□□□□□ -2.06
LDB3O75112 Y_RNA.179-201ENST00000363844 90 ntBASIC2.21□□□□□ -2.06
LDB3O75112 SNORD114-30-201ENST00000364448 72 ntBASIC2.21□□□□□ -2.06
LDB3O75112 Y_RNA.275-201ENST00000364726 110 ntBASIC2.21□□□□□ -2.06
LDB3O75112 Y_RNA.292-201ENST00000364904 97 ntBASIC2.21□□□□□ -2.06
LDB3O75112 SNORA67.4-201ENST00000384688 142 ntBASIC2.21□□□□□ -2.06
LDB3O75112 MIR95-201ENST00000385072 81 ntBASIC2.21□□□□□ -2.06
LDB3O75112 RNA5SP181-201ENST00000410246 98 ntBASIC2.21□□□□□ -2.06
LDB3O75112 Y_RNA.595-201ENST00000410403 105 ntBASIC2.21□□□□□ -2.06
LDB3O75112 Y_RNA.597-201ENST00000410463 100 ntBASIC2.21□□□□□ -2.06
LDB3O75112 RN7SKP51-201ENST00000410781 304 ntBASIC2.21□□□□□ -2.06
LDB3O75112 IFNA11P-201ENST00000446352 526 ntBASIC2.21□□□□□ -2.06
LDB3O75112 UQCRBP2-201ENST00000447827 297 ntBASIC2.21□□□□□ -2.06
LDB3O75112 Y_RNA.644-201ENST00000459006 113 ntBASIC2.21□□□□□ -2.06
LDB3O75112 RNU6-625P-201ENST00000459412 107 ntBASIC2.21□□□□□ -2.06
LDB3O75112 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.21□□□□□ -2.06
LDB3O75112 Y_RNA.674-201ENST00000516362 113 ntBASIC2.21□□□□□ -2.06
LDB3O75112 HSPE1P18-201ENST00000517602 280 ntBASIC2.21□□□□□ -2.06
LDB3O75112 AC233702.2-202ENST00000562547 291 ntBASIC2.21□□□□□ -2.06
LDB3O75112 SNRPGP20-201ENST00000604477 205 ntBASIC2.21□□□□□ -2.06
LDB3O75112 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.21□□□□□ -2.06
LDB3O75112 AC004467.1-201ENST00000615678 330 ntBASIC2.21□□□□□ -2.06
LDB3O75112 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.21□□□□□ -2.06
LDB3O75112 AC016717.2-201ENST00000609089 5141 ntBASIC2.21□□□□□ -2.06
LDB3O75112 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.21□□□□□ -2.06
LDB3O75112 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
LDB3O75112 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
LDB3O75112 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.2□□□□□ -2.06
LDB3O75112 MIR410-201ENST00000362222 80 ntBASIC2.2□□□□□ -2.06
LDB3O75112 RNU4-80P-201ENST00000363200 141 ntBASIC2.2□□□□□ -2.06
LDB3O75112 Y_RNA.180-201ENST00000363867 113 ntBASIC2.2□□□□□ -2.06
LDB3O75112 RNU6-454P-201ENST00000364292 107 ntBASIC2.2□□□□□ -2.06
LDB3O75112 SNORD32B-201ENST00000364460 84 ntBASIC2.2□□□□□ -2.06
LDB3O75112 SNORD87-201ENST00000364849 89 ntBASIC2.2□□□□□ -2.06
LDB3O75112 RNU6-793P-201ENST00000384233 104 ntBASIC2.2□□□□□ -2.06
LDB3O75112 RNU6-1274P-201ENST00000384557 107 ntBASIC2.2□□□□□ -2.06
LDB3O75112 AL033519.2-201ENST00000403958 392 ntBASIC2.2□□□□□ -2.06
LDB3O75112 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.2□□□□□ -2.06
LDB3O75112 COX6CP10-201ENST00000416832 224 ntBASIC2.2□□□□□ -2.06
LDB3O75112 AC007395.1-201ENST00000451333 677 ntBASIC2.2□□□□□ -2.06
LDB3O75112 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.2□□□□□ -2.06
LDB3O75112 RNA5SP24-201ENST00000516478 95 ntBASIC2.2□□□□□ -2.06
LDB3O75112 Y_RNA.700-201ENST00000516806 100 ntBASIC2.2□□□□□ -2.06
LDB3O75112 RNU6-255P-201ENST00000516957 105 ntBASIC2.2□□□□□ -2.06
LDB3O75112 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.2□□□□□ -2.06
LDB3O75112 AL162424.1-201ENST00000602325 221 ntBASIC2.2□□□□□ -2.06
LDB3O75112 AL355297.2-201ENST00000604792 129 ntBASIC2.2□□□□□ -2.06
LDB3O75112 RPL17P51-201ENST00000605218 238 ntBASIC2.2□□□□□ -2.06
LDB3O75112 AL137847.3-201ENST00000611521 109 ntBASIC2.2□□□□□ -2.06
LDB3O75112 AL590240.4-201ENST00000616908 390 ntBASIC2.2□□□□□ -2.06
LDB3O75112 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
LDB3O75112 AC068700.1-201ENST00000565862 3754 ntBASIC2.19□□□□□ -2.06
LDB3O75112 Y_RNA.136-201ENST00000363444 102 ntBASIC2.19□□□□□ -2.06
LDB3O75112 Y_RNA.230-201ENST00000364348 109 ntBASIC2.19□□□□□ -2.06
LDB3O75112 RNU6-245P-201ENST00000384020 107 ntBASIC2.19□□□□□ -2.06
LDB3O75112 RNU6-1289P-201ENST00000384431 106 ntBASIC2.19□□□□□ -2.06
LDB3O75112 SNORA53-201ENST00000391141 249 ntBASIC2.19□□□□□ -2.06
LDB3O75112 RNU4-61P-201ENST00000411243 107 ntBASIC2.19□□□□□ -2.06
LDB3O75112 HMGN2P35-201ENST00000412164 270 ntBASIC2.19□□□□□ -2.06
LDB3O75112 AC027124.2-201ENST00000428249 105 ntBASIC2.19□□□□□ -2.06
LDB3O75112 RPS15AP28-201ENST00000435088 386 ntBASIC2.19□□□□□ -2.06
LDB3O75112 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.19□□□□□ -2.06
LDB3O75112 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.19□□□□□ -2.06
LDB3O75112 MIR4282-201ENST00000583613 67 ntBASIC2.19□□□□□ -2.06
LDB3O75112 DEFB117-201ENST00000602356 141 ntBASIC2.19□□□□□ -2.06
LDB3O75112 AC005828.6-201ENST00000606610 232 ntBASIC2.19□□□□□ -2.06
LDB3O75112 AC006001.4-201ENST00000622243 395 ntBASIC2.19□□□□□ -2.06
LDB3O75112 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.19□□□□□ -2.06
LDB3O75112 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.19□□□□□ -2.06
LDB3O75112 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.19□□□□□ -2.06
LDB3O75112 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LDB3O75112 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.18□□□□□ -2.06
LDB3O75112 UBE2WP1-201ENST00000362030 340 ntBASIC2.18□□□□□ -2.06
LDB3O75112 SNORA25.1-201ENST00000362326 128 ntBASIC2.18□□□□□ -2.06
LDB3O75112 RNU6-944P-201ENST00000364023 107 ntBASIC2.18□□□□□ -2.06
LDB3O75112 RNU6-923P-201ENST00000364753 107 ntBASIC2.18□□□□□ -2.06
LDB3O75112 SNORA18.2-201ENST00000383865 132 ntBASIC2.18□□□□□ -2.06
LDB3O75112 RNU1-52P-201ENST00000384190 164 ntBASIC2.18□□□□□ -2.06
LDB3O75112 MIR1294-201ENST00000408503 142 ntBASIC2.18□□□□□ -2.06
LDB3O75112 Y_RNA.793-201ENST00000411222 111 ntBASIC2.18□□□□□ -2.06
LDB3O75112 AC007064.1-201ENST00000412238 351 ntBASIC2.18□□□□□ -2.06
LDB3O75112 AL135790.2-201ENST00000437701 267 ntBASIC2.18□□□□□ -2.06
LDB3O75112 POLR2KP2-201ENST00000438155 177 ntBASIC2.18□□□□□ -2.06
LDB3O75112 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.18□□□□□ -2.06
LDB3O75112 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.18□□□□□ -2.06
LDB3O75112 SNORA27.4-201ENST00000516650 95 ntBASIC2.18□□□□□ -2.06
LDB3O75112 RNU6-861P-201ENST00000516745 106 ntBASIC2.18□□□□□ -2.06
LDB3O75112 SNORA48.11-201ENST00000517015 89 ntBASIC2.18□□□□□ -2.06
LDB3O75112 AC087441.2-201ENST00000529141 262 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms