Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MIR300-201ENST00000401138 83 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 RNA5SP504-201ENST00000410676 117 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 RNU6-57P-201ENST00000411348 103 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 NFU1P2-201ENST00000448700 469 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 RN7SKP179-201ENST00000516126 217 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 CYP3A52P-201ENST00000563326 91 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 AP003465.2-201ENST00000602571 373 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 AL078603.1-201ENST00000603824 313 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 AC006504.8-201ENST00000621046 635 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 AL359697.1-201ENST00000624879 587 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 MIR3688-2-201ENST00000636963 87 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 BX322639.1-202ENST00000423987 2213 ntBASIC1.23□□□□□ -2.21
TM9SF3Q9HD45 SNORA72.2-201ENST00000365028 127 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 SNORA4.2-201ENST00000365313 147 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 SNORA70.7-201ENST00000384159 133 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 Y_RNA.453-201ENST00000384223 109 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 RNU6-975P-201ENST00000384296 105 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 SNORA67.2-201ENST00000384300 149 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 Y_RNA.533-201ENST00000384596 114 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 MTND3P21-201ENST00000433774 331 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 MTATP6P13-201ENST00000438531 667 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 PGBD4P5-201ENST00000445958 426 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 AC007215.1-201ENST00000464893 276 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 AC067942.3-201ENST00000512025 362 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 RNU2-34P-201ENST00000516534 121 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 AC026470.2-201ENST00000561492 181 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 AC124303.1-201ENST00000605703 360 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 AC009033.1-201ENST00000624279 431 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 MIR338-201ENST00000636369 67 ntBASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
TM9SF3Q9HD45 RNA5SP327-201ENST00000362494 101 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 SNORD114-27-201ENST00000363766 70 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 RNU6-873P-201ENST00000363833 107 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 RNU1-93P-201ENST00000364704 169 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 RNU6-42P-201ENST00000384165 107 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 RNU6-417P-201ENST00000384712 107 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 RNA5SP467-201ENST00000391274 118 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 AC016909.1-201ENST00000415916 166 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 ZNF885P-201ENST00000420174 1098 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 RPS29P29-201ENST00000456396 171 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 RPS29P25-201ENST00000481709 171 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 AC093852.1-201ENST00000503587 266 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 RNU6-864P-201ENST00000516256 108 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 RNA5SP220-201ENST00000516298 104 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 MTND1P5-201ENST00000517906 940 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 AC027288.2-201ENST00000553028 243 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 MIR4709-201ENST00000577272 72 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 AL353149.1-201ENST00000610667 244 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 AC090517.2-201ENST00000614966 680 ntBASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.21□□□□□ -2.22
TM9SF3Q9HD45 Y_RNA.287-201ENST00000364853 94 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 USP9YP30-201ENST00000430729 455 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 TOMM22P2-201ENST00000430735 237 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 HMGN2P34-201ENST00000437647 269 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 AC073910.1-201ENST00000445047 438 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 RNU7-57P-201ENST00000459540 60 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 AC069439.1-201ENST00000494739 167 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 Y_RNA.655-201ENST00000515919 96 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 ACA59.1-201ENST00000515966 143 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 RNU4-49P-201ENST00000516080 140 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 SNORA25.14-201ENST00000516481 132 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 RNU6-58P-201ENST00000517143 103 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 AC011604.1-201ENST00000545978 196 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 AK6P2-201ENST00000549020 471 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 SNRPGP20-201ENST00000604477 205 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 RMST_2.1-201ENST00000617263 136 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 MTND4P12-201ENST00000498999 1377 ntBASIC1.2□□□□□ -2.22
TM9SF3Q9HD45 Y_RNA.415-201ENST00000384012 112 ntBASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 RNU6-842P-201ENST00000384269 107 ntBASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 RNU6-373P-201ENST00000411247 98 ntBASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 DAP3P1-201ENST00000441522 278 ntBASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 RNU6-948P-201ENST00000516374 107 ntBASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 RNA5SP454-201ENST00000517231 127 ntBASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 AL512310.8-201ENST00000550183 120 ntBASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 AC084782.3-201ENST00000612282 578 ntBASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 AC040896.1-201ENST00000613819 479 ntBASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.19□□□□□ -2.22
TM9SF3Q9HD45 MIR6128-201ENST00000615528 109 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms