Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL627230.6-201ENST00000611129 280 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 AL078596.1-201ENST00000624856 447 ntBASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.81□□□□□ -2.12
CCDC3Q9BQI4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 MIR410-201ENST00000362222 80 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 RNU6-1115P-201ENST00000362490 106 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 RNU6-1305P-201ENST00000364353 104 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.252-201ENST00000364556 101 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 RNA5SP190-201ENST00000365222 118 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.463-201ENST00000384271 102 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 SNORA48.1-201ENST00000390879 135 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 RNU11-3P-201ENST00000391111 133 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.592-201ENST00000410274 109 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 AL158823.1-201ENST00000418441 478 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 AC108667.1-201ENST00000428618 249 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 RNU6-221P-201ENST00000459541 99 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 RNU6-976P-201ENST00000516086 111 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 RNA5SP364-201ENST00000516938 78 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 SUMO2P18-201ENST00000518873 252 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 AC093023.1-201ENST00000547375 507 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 MIR4287-201ENST00000579398 78 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 MIR5695-201ENST00000579717 85 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 AL133255.1-201ENST00000606374 441 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 AL590240.4-201ENST00000616908 390 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 AC084768.2-201ENST00000622736 221 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 MTND5P35-201ENST00000557537 1720 ntBASIC1.8□□□□□ -2.12
CCDC3Q9BQI4 RNU6-222P-201ENST00000362438 107 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 RNA5SP138-201ENST00000365098 114 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 RNU1-115P-201ENST00000365329 160 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.358-201ENST00000365491 99 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 MIR9-3-201ENST00000385084 90 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 SNORA69.1-201ENST00000390904 137 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 AL033519.2-201ENST00000403958 392 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 MIR1185-2-201ENST00000408687 86 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.595-201ENST00000410403 105 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 MTND4P28-201ENST00000426217 387 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 RNU7-57P-201ENST00000459540 60 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 GNAI2P1-201ENST00000541815 315 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 AK6P2-201ENST00000549020 471 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 AC104985.2-201ENST00000620598 500 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 uc_338.20-201ENST00000621563 178 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 snoZ196.1-201ENST00000625269 89 ntBASIC1.79□□□□□ -2.12
CCDC3Q9BQI4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 Y_RNA.395-201ENST00000383945 109 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 RNU6-418P-201ENST00000384035 107 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 SNORA17.3-201ENST00000391159 129 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 RNA5SP212-201ENST00000391223 107 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 AL627390.1-201ENST00000396055 340 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 RPL23AP36-201ENST00000413895 458 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 AC114482.1-201ENST00000418010 247 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 SNORD13-201ENST00000459299 104 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 MRPS17P9-201ENST00000511924 393 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 MIR4299-201ENST00000577899 72 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 MZT1P2-201ENST00000604387 248 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 MIR8081-201ENST00000611533 95 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 MIR1244-1-201ENST00000612829 85 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 AC022513.1-201ENST00000624512 117 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 AC138305.3-201ENST00000624988 240 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 MIR1244-3-201ENST00000635744 85 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 MIR1244-2-201ENST00000636449 85 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 MIR1244-4-202ENST00000636813 85 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.78□□□□□ -2.12
CCDC3Q9BQI4 AL159152.1-201ENST00000635019 2587 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 RNU6-1301P-201ENST00000362724 104 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.58-201ENST00000362807 102 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 SNORD115-3-201ENST00000363100 82 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.112-201ENST00000363250 102 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.154-201ENST00000363624 102 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.197-201ENST00000364004 102 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 RNY3P1-201ENST00000365085 102 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 RNY3-201ENST00000365484 102 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 RNU6-318P-201ENST00000384283 103 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 MIR548B-201ENST00000385247 97 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 RNU6-1304P-201ENST00000411374 106 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 AC008134.1-201ENST00000420943 193 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 AC018865.2-201ENST00000423631 129 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 TOMM22P2-201ENST00000430735 237 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 RPS29P11-201ENST00000496507 171 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 AC108729.3-201ENST00000513484 108 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 RNU6-120P-201ENST00000516077 103 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.675-201ENST00000516389 149 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 RNU6-699P-201ENST00000517081 110 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 253.8 ms