Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SNORD116-29-201ENST00000384516 83 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 RNU6-95P-201ENST00000384697 107 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 MIR30A-201ENST00000385092 71 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.22□□□□□ -2.21
CDX2Q99626 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.22□□□□□ -2.21
CDX2Q99626 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.22□□□□□ -2.21
CDX2Q99626 MTND3P10-201ENST00000450967 341 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 RPS29P29-201ENST00000456396 171 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 AC016925.1-201ENST00000458303 298 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 RPS29P27-201ENST00000463711 170 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 AC130509.1-201ENST00000464158 433 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.22□□□□□ -2.21
CDX2Q99626 AC016632.1-201ENST00000503994 196 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 AK3P2-201ENST00000507976 429 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.22□□□□□ -2.21
CDX2Q99626 AC005741.1-201ENST00000511094 432 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 AC069113.1-201ENST00000517763 267 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 RNU6-323P-201ENST00000521915 107 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.22□□□□□ -2.21
CDX2Q99626 AL355375.2-201ENST00000574825 175 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 MIR3923-201ENST00000579521 83 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 FGF7P1-201ENST00000582820 288 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 RNU6-85P-201ENST00000605989 107 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 U2.17-201ENST00000611454 95 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.22□□□□□ -2.21
CDX2Q99626 TPTEP1-208ENST00000636884 213 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 MTND5P10-201ENST00000603719 1809 ntBASIC1.22□□□□□ -2.21
CDX2Q99626 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
CDX2Q99626 Y_RNA.48-201ENST00000362710 103 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 Y_RNA.61-201ENST00000362835 102 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 Y_RNA.72-201ENST00000362894 103 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 Y_RNA.85-201ENST00000363014 111 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 Y_RNA.135-201ENST00000363439 95 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 Y_RNA.138-201ENST00000363462 102 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 Y_RNA.263-201ENST00000364659 114 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 Y_RNA.404-201ENST00000383978 102 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 SNORA36A-201ENST00000384221 132 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 RNU6-296P-201ENST00000384608 107 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 MIR548K-201ENST00000408406 116 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 RNU2-41P-201ENST00000410991 178 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.21□□□□□ -2.22
CDX2Q99626 SDAD1P3-201ENST00000427380 333 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 MTND3P23-201ENST00000431980 347 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 MTCO1P44-201ENST00000441935 243 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.21□□□□□ -2.22
CDX2Q99626 RNU7-138P-201ENST00000459479 64 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 MTND5P5-201ENST00000503764 376 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.21□□□□□ -2.22
CDX2Q99626 SNORA19.2-201ENST00000516013 114 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 RNU6-566P-201ENST00000516790 107 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 SNORA31.17-201ENST00000516953 127 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 RNA5SP454-201ENST00000517231 127 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.21□□□□□ -2.22
CDX2Q99626 APOOP3-201ENST00000536787 586 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 EIF4A1P12-201ENST00000551910 141 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 AL160236.1-201ENST00000556317 195 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 AC021231.3-201ENST00000558497 370 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 CYP4A27P-201ENST00000567218 190 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.21□□□□□ -2.22
CDX2Q99626 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.21□□□□□ -2.22
CDX2Q99626 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
CDX2Q99626 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
CDX2Q99626 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
CDX2Q99626 MIR424-201ENST00000362227 98 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 RNU4-79P-201ENST00000362764 141 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 RNU6-112P-201ENST00000363599 104 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 SNORD113-7-201ENST00000363762 77 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 U3.9-201ENST00000363823 204 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 Y_RNA.258-201ENST00000364613 105 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 SNORD31B-201ENST00000364977 69 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 SNORD116-11-201ENST00000383882 92 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 RNU6-842P-201ENST00000384269 107 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 RNU6-1009P-201ENST00000390996 107 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 EIF4E2P1-201ENST00000393781 255 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 RNU6-373P-201ENST00000411247 98 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 JTBP1-201ENST00000441314 247 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 MTCO3P10-201ENST00000455912 772 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 RPS29P23-201ENST00000458635 123 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 Y_RNA.632-201ENST00000459189 102 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 AC091885.1-201ENST00000506658 268 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 Y_RNA.691-201ENST00000516611 103 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 DEFB131C-201ENST00000528817 165 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 AC016256.1-201ENST00000547971 354 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 FRG2DP-202ENST00000566967 323 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 MIR3976-201ENST00000606807 139 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 AL050343.2-201ENST00000607338 280 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.2□□□□□ -2.22
CDX2Q99626 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
CDX2Q99626 RNU6-797P-201ENST00000363101 109 ntBASIC1.19□□□□□ -2.22
CDX2Q99626 RNU6-82P-201ENST00000363970 107 ntBASIC1.19□□□□□ -2.22
CDX2Q99626 Y_RNA.216-201ENST00000364205 93 ntBASIC1.19□□□□□ -2.22
CDX2Q99626 RNU6-1329P-201ENST00000365664 107 ntBASIC1.19□□□□□ -2.22
CDX2Q99626 RNU6-439P-201ENST00000384188 106 ntBASIC1.19□□□□□ -2.22
CDX2Q99626 Y_RNA.530-201ENST00000384587 101 ntBASIC1.19□□□□□ -2.22
CDX2Q99626 Y_RNA.535-201ENST00000384612 99 ntBASIC1.19□□□□□ -2.22
CDX2Q99626 RNU6-331P-201ENST00000384724 107 ntBASIC1.19□□□□□ -2.22
CDX2Q99626 MIR487A-201ENST00000385009 80 ntBASIC1.19□□□□□ -2.22
CDX2Q99626 RNA5SP118-201ENST00000410385 109 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms