Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR8065-201ENST00000620577 100 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.8□□□□□ -2.28
FOXA1P55317 AC009033.1-201ENST00000624279 431 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 RNA5SP327-201ENST00000362494 101 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 RNU6-1252P-201ENST00000363054 104 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 Y_RNA.112-201ENST00000363250 102 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 RNA5SP259-201ENST00000365541 109 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 Y_RNA.373-201ENST00000365600 103 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 RNU6-128P-201ENST00000383976 107 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 SNORD116-1-201ENST00000384335 95 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 Y_RNA.540-201ENST00000384638 111 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 MIR32-201ENST00000384965 70 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC0.79□□□□□ -2.28
FOXA1P55317 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.79□□□□□ -2.28
FOXA1P55317 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.79□□□□□ -2.28
FOXA1P55317 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.79□□□□□ -2.28
FOXA1P55317 Z82188.1-201ENST00000436709 154 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 AC098826.2-201ENST00000452011 651 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 RNU6-221P-201ENST00000459541 99 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.79□□□□□ -2.28
FOXA1P55317 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.79□□□□□ -2.28
FOXA1P55317 AC107401.1-201ENST00000503426 685 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 AC019235.1-201ENST00000503847 207 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 Y_RNA.665-201ENST00000516177 98 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 Y_RNA.704-201ENST00000516851 102 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 RNU6-1223P-201ENST00000517124 104 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 TPRKBP2-201ENST00000565969 475 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 AL929325.1-201ENST00000603096 117 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 SNORD11B-201ENST00000607707 90 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 AC245008.1-201ENST00000608123 476 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 MIR6515-201ENST00000619843 57 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 U6.108-201ENST00000637764 58 ntBASIC0.79□□□□□ -2.28
FOXA1P55317 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
FOXA1P55317 MIR373-201ENST00000362273 69 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 Y_RNA.51-201ENST00000362725 102 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 RNU6-1240P-201ENST00000365155 104 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 AL356776.1-201ENST00000406574 447 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 Y_RNA.615-201ENST00000410769 117 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 AC008134.1-201ENST00000420943 193 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.78□□□□□ -2.28
FOXA1P55317 AC010154.1-201ENST00000425857 269 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.78□□□□□ -2.28
FOXA1P55317 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.78□□□□□ -2.28
FOXA1P55317 PCMTD1P1-201ENST00000455560 355 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.78□□□□□ -2.28
FOXA1P55317 MTCO2P30-201ENST00000503662 364 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.78□□□□□ -2.28
FOXA1P55317 RNU1-142P-201ENST00000516682 145 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 RNA5SP54-201ENST00000516951 92 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 ZNF519P2-201ENST00000557032 169 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.78□□□□□ -2.28
FOXA1P55317 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.78□□□□□ -2.28
FOXA1P55317 MIR151B-201ENST00000584249 96 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 AC013244.2-201ENST00000603396 103 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 MZT1P2-201ENST00000604387 248 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 AC021506.2-201ENST00000612354 169 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 AC099654.5-201ENST00000636479 350 ntBASIC0.78□□□□□ -2.28
FOXA1P55317 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.78□□□□□ -2.28
FOXA1P55317 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
FOXA1P55317 RNU6-1123P-201ENST00000362347 106 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 SNORD115-8-201ENST00000363856 82 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 SNORD87-201ENST00000364849 89 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RNU4-9P-201ENST00000364951 139 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 SNORD115-38-201ENST00000365037 82 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RNU6-245P-201ENST00000384020 107 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RNU6-483P-201ENST00000384088 108 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RNU6-950P-201ENST00000384651 107 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RNU6-95P-201ENST00000384697 107 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
FOXA1P55317 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RNU6-908P-201ENST00000410160 94 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.77□□□□□ -2.29
FOXA1P55317 AL590632.1-201ENST00000424289 371 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AL445305.1-201ENST00000432577 575 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AC005002.2-201ENST00000438228 269 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 HSPE1P13-201ENST00000451143 297 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 MTND1P11-201ENST00000456661 876 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AL133373.1-201ENST00000497098 94 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RNU6-1281P-201ENST00000516223 105 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 SNORA25.14-201ENST00000516481 132 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 SNORA31.10-201ENST00000516482 106 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RN7SKP88-201ENST00000516847 250 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RNU6-58P-201ENST00000517143 103 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 RNA5SP454-201ENST00000517231 127 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 SUMO2P16-201ENST00000519475 264 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AL162413.1-201ENST00000603198 110 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AC022217.4-201ENST00000604389 163 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AC092954.2-201ENST00000609103 430 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 7SK.8-201ENST00000612110 250 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 DISC2.1-201ENST00000612827 205 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AL359075.3-201ENST00000613288 217 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 7SK.11-201ENST00000615477 250 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AC006504.8-201ENST00000621046 635 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 7SK.13-201ENST00000622040 250 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 AC099654.12-201ENST00000639868 649 ntBASIC0.77□□□□□ -2.29
FOXA1P55317 SNORD115-32-201ENST00000364079 82 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 Y_RNA.319-201ENST00000365138 92 ntBASIC0.76□□□□□ -2.29
FOXA1P55317 RNU6-1031P-201ENST00000384773 107 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms