Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC025465.3-201ENST00000510570 311 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 MTND4LP26-201ENST00000518144 282 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.55□□□□□ -2.16
DDX28Q9NUL7 AC018462.2-201ENST00000605375 395 ntBASIC1.55□□□□□ -2.16
DDX28Q9NUL7 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.55□□□□□ -2.16
DDX28Q9NUL7 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.55□□□□□ -2.16
DDX28Q9NUL7 MIR378A-201ENST00000362177 66 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 MIR337-201ENST00000362281 93 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.505-201ENST00000384489 102 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 RNU2-7P-201ENST00000410794 178 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 RNU6-57P-201ENST00000411348 103 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 AC069257.2-201ENST00000441819 155 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 NDUFB4P10-201ENST00000452541 359 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.54□□□□□ -2.16
DDX28Q9NUL7 AC046134.1-201ENST00000514454 666 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.54□□□□□ -2.16
DDX28Q9NUL7 MIR4498-201ENST00000577599 66 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.54□□□□□ -2.16
DDX28Q9NUL7 AC084782.3-201ENST00000612282 578 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.54□□□□□ -2.16
DDX28Q9NUL7 MTND4P12-201ENST00000498999 1377 ntBASIC1.54□□□□□ -2.16
DDX28Q9NUL7 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
DDX28Q9NUL7 snoU2-30.2-201ENST00000362805 70 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 U3.8-201ENST00000363675 217 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 SNORA63D-201ENST00000364359 132 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 RNA5SP190-201ENST00000365222 118 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 RNU6-439P-201ENST00000384188 106 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 Y_RNA.619-201ENST00000410951 90 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.53□□□□□ -2.16
DDX28Q9NUL7 AC008134.1-201ENST00000420943 193 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.53□□□□□ -2.16
DDX28Q9NUL7 AC108667.1-201ENST00000428618 249 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 HSPE1P9-201ENST00000440046 311 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 RNU6-221P-201ENST00000459541 99 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 RPL36AP21-201ENST00000490372 323 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 AC026782.1-201ENST00000512952 449 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 RNU6-1016P-201ENST00000516689 94 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 RNA5SP481-201ENST00000516814 122 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
DDX28Q9NUL7 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.53□□□□□ -2.16
DDX28Q9NUL7 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.53□□□□□ -2.16
DDX28Q9NUL7 UBL5P4-201ENST00000562584 236 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 AC006001.4-201ENST00000622243 395 ntBASIC1.53□□□□□ -2.16
DDX28Q9NUL7 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.52□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.48-201ENST00000362710 103 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 RNU6-414P-201ENST00000363705 104 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.179-201ENST00000363844 90 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 SNORA72.2-201ENST00000365028 127 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 RNU6-338P-201ENST00000383888 105 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 RNU6-793P-201ENST00000384233 104 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 MIR515-2-201ENST00000384883 83 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 MIR515-1-201ENST00000384884 83 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 MIR548B-201ENST00000385247 97 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 MIR1253-201ENST00000408273 105 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 MIR548F5-201ENST00000408421 86 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.599-201ENST00000410489 109 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 FTH1P12-201ENST00000432137 551 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 HMGN2P34-201ENST00000437647 269 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.52□□□□□ -2.17
DDX28Q9NUL7 AC107399.1-201ENST00000451226 265 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.52□□□□□ -2.17
DDX28Q9NUL7 AP000870.1-201ENST00000472927 406 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.706-201ENST00000516933 99 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 AC025647.1-201ENST00000517879 253 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 CBX3P8-201ENST00000532412 525 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.52□□□□□ -2.17
DDX28Q9NUL7 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.52□□□□□ -2.17
DDX28Q9NUL7 AC100812.1-201ENST00000607622 580 ntBASIC1.52□□□□□ -2.17
DDX28Q9NUL7 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.52□□□□□ -2.17
DDX28Q9NUL7 MIR424-201ENST00000362227 98 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 RNU6-1240P-201ENST00000365155 104 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.339-201ENST00000365325 102 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 MIR10B-201ENST00000385011 110 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
DDX28Q9NUL7 MIR1185-2-201ENST00000408687 86 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 RNU6-1050P-201ENST00000410388 107 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 AL445305.1-201ENST00000432577 575 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 RPS3AP52-201ENST00000435639 297 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 AC091179.3-201ENST00000474761 144 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 RPL26P26-201ENST00000480251 434 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 RNA5SP437-201ENST00000517249 129 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 AL121579.1-201ENST00000555129 305 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 MIR4255-201ENST00000579351 72 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 AL355802.3-201ENST00000607571 545 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 AC084768.2-201ENST00000622736 221 ntBASIC1.51□□□□□ -2.17
DDX28Q9NUL7 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.2-201ENST00000362330 96 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 RNU6-727P-201ENST00000363592 107 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 SNORD87-201ENST00000364849 89 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.287-201ENST00000364853 94 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 RNU6-767P-201ENST00000384132 107 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.482-201ENST00000384377 111 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 RNU6-417P-201ENST00000384712 107 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.594-201ENST00000410373 140 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 MTND3P23-201ENST00000431980 347 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 AL163540.1-201ENST00000485382 386 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 AC093303.1-201ENST00000514549 295 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.708-201ENST00000516950 96 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 MIR5701-3-201ENST00000578890 82 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms