Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 Y_RNA.339-201ENST00000365325 102 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 MIR764-201ENST00000390811 85 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 SNORA67.6-201ENST00000391093 99 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 RNU6-510P-201ENST00000391239 108 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 RNU4-14P-201ENST00000410858 122 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 SNORD5.1-201ENST00000458800 75 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 MTND4P17-201ENST00000470444 350 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 RPL7P42-201ENST00000481005 679 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 AC079140.2-201ENST00000506193 142 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS39Q96JC1 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS39Q96JC1 MIR4753-201ENST00000585119 83 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 AC011712.1-201ENST00000588959 234 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS39Q96JC1 AL355802.3-201ENST00000607571 545 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 AC126177.8-201ENST00000618339 1015 ntBASIC1.47□□□□□ -2.17
VPS39Q96JC1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.46□□□□□ -2.18
VPS39Q96JC1 MIR26B-201ENST00000362251 77 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 RNU6-222P-201ENST00000362438 107 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 RNU6-873P-201ENST00000363833 107 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 Y_RNA.319-201ENST00000365138 92 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 Y_RNA.404-201ENST00000383978 102 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 RNU6-331P-201ENST00000384724 107 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 SNORA67.5-201ENST00000391036 107 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 RNU6-876P-201ENST00000391295 104 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 AL117342.1-201ENST00000404861 406 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 Y_RNA.594-201ENST00000410373 140 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 RNU6-1304P-201ENST00000411374 106 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 MTND1P2-201ENST00000430604 821 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 AC245047.4-201ENST00000433189 144 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 SNORD13-201ENST00000459299 104 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 SNORA25.14-201ENST00000516481 132 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 RNU6-1213P-201ENST00000517075 94 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 SNORA31.24-201ENST00000517232 57 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 RNA5SP437-201ENST00000517249 129 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.46□□□□□ -2.18
VPS39Q96JC1 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.46□□□□□ -2.18
VPS39Q96JC1 AL160236.1-201ENST00000556317 195 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 AC026470.2-201ENST00000561492 181 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 AC005668.1-201ENST00000571142 476 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 SNRPGP20-201ENST00000604477 205 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 AC018462.2-201ENST00000605375 395 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 U6atac.1-201ENST00000616025 117 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 AL359757.2-201ENST00000624309 274 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 MTND4P12-201ENST00000498999 1377 ntBASIC1.46□□□□□ -2.18
VPS39Q96JC1 RNU6-595P-201ENST00000363944 107 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 RNU6-17P-201ENST00000384245 107 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 RNU6-975P-201ENST00000384296 105 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 RNU6-18P-201ENST00000384527 107 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 MT-TL1-201ENST00000386347 75 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 MIR300-201ENST00000401138 83 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 RNU6-1050P-201ENST00000410388 107 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 RNU6-57P-201ENST00000411348 103 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 PDCL2P1-201ENST00000419302 352 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 AL354695.1-201ENST00000427935 228 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 AL135790.2-201ENST00000437701 267 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 AC027119.1-201ENST00000440877 241 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 AP000870.1-201ENST00000472927 406 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 AC103851.1-201ENST00000506833 274 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 AC067942.3-201ENST00000512025 362 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 AC011406.1-201ENST00000512440 370 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 RNU6-120P-201ENST00000516077 103 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 RNU6-856P-201ENST00000516959 98 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 AC084364.2-201ENST00000546924 395 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.45□□□□□ -2.18
VPS39Q96JC1 AC015712.3-201ENST00000559380 164 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.45□□□□□ -2.18
VPS39Q96JC1 AC005014.2-201ENST00000607795 599 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 AC006001.4-201ENST00000622243 395 ntBASIC1.45□□□□□ -2.18
VPS39Q96JC1 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.44□□□□□ -2.18
VPS39Q96JC1 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
VPS39Q96JC1 Y_RNA.2-201ENST00000362330 96 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 Y_RNA.88-201ENST00000363029 99 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 SNORD115-32-201ENST00000364079 82 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 RNU1-96P-201ENST00000364163 162 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 RNU6-596P-201ENST00000365395 98 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 Y_RNA.390-201ENST00000383932 102 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 Y_RNA.415-201ENST00000384012 112 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 RNU6-541P-201ENST00000384709 110 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 MIR153-2-201ENST00000385225 87 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 MIR548B-201ENST00000385247 97 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
VPS39Q96JC1 AC016909.1-201ENST00000415916 166 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 AL139396.1-201ENST00000421137 167 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 AL353997.1-201ENST00000432936 108 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 AC069257.2-201ENST00000441819 155 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 MTND3P10-201ENST00000450967 341 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 RNU7-57P-201ENST00000459540 60 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.44□□□□□ -2.18
VPS39Q96JC1 RNA5SP61-201ENST00000516453 100 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.44□□□□□ -2.18
VPS39Q96JC1 AC009229.3-201ENST00000608056 282 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.44□□□□□ -2.18
VPS39Q96JC1 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.44□□□□□ -2.18
VPS39Q96JC1 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
VPS39Q96JC1 ZNF299P-201ENST00000406845 1804 ntBASIC1.43□□□□□ -2.18
VPS39Q96JC1 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms