Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 Y_RNA.594-201ENST00000410373 140 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 RPL37P10-201ENST00000412884 288 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 AC243428.1-201ENST00000421099 264 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 HSPE1P9-201ENST00000440046 311 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 DAP3P1-201ENST00000441522 278 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 RNU7-152P-201ENST00000458982 64 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.632-201ENST00000459189 102 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 RPS23P5-201ENST00000495419 428 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 RNA5SP384-201ENST00000516615 116 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 FRG2DP-202ENST00000566967 323 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 MIR4795-201ENST00000584182 89 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 Z98751.3-201ENST00000604447 521 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 AC113139.1-201ENST00000605049 239 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 AC124303.1-201ENST00000605703 360 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 MIR8076-201ENST00000611401 83 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 MTND4LP32-201ENST00000636111 270 ntBASIC1.5□□□□□ -2.17
ZNF540Q8NDQ6 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 MIR340-201ENST00000362125 95 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.61-201ENST00000362835 102 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 RNU1-76P-201ENST00000362903 159 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-596P-201ENST00000365395 98 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 SNORD26-201ENST00000384147 75 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.482-201ENST00000384377 111 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-601P-201ENST00000384540 107 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.646-201ENST00000410980 101 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-370P-201ENST00000411008 104 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 RPL30P13-201ENST00000418873 348 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AL139396.1-201ENST00000421137 167 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AC107399.1-201ENST00000451226 265 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 PCMTD1P1-201ENST00000455560 355 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 MTCO3P10-201ENST00000455912 772 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 TOMM22P6-201ENST00000465035 409 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 FO393415.2-201ENST00000480085 343 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 RPL7P42-201ENST00000481005 679 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AF186996.7-201ENST00000492781 209 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AC079140.2-201ENST00000506193 142 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-120P-201ENST00000516077 103 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-1098P-201ENST00000516772 96 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 MRPS36P4-201ENST00000534436 298 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 SUB1P3-201ENST00000564581 315 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AC005668.1-201ENST00000571142 476 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 MIR5696-201ENST00000578474 85 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AC009229.3-201ENST00000608056 282 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AC005520.5-201ENST00000613926 164 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AC068205.3-201ENST00000636385 468 ntBASIC1.49□□□□□ -2.17
ZNF540Q8NDQ6 AC100821.1-201ENST00000523153 2479 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 RNU5B-2P-201ENST00000363036 113 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-593P-201ENST00000364716 112 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.504-201ENST00000384481 104 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-310P-201ENST00000384655 107 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 RNA5SP213-201ENST00000391031 106 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 AL627390.1-201ENST00000396055 340 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-1050P-201ENST00000410388 107 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 RPL23AP36-201ENST00000413895 458 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 Z82205.1-201ENST00000428456 297 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 MTCO3P29-201ENST00000432119 779 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 AC093019.1-201ENST00000443135 252 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.635-201ENST00000459041 101 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 SNORD19B-201ENST00000459623 84 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.718-201ENST00000517110 102 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 AL050343.2-201ENST00000607338 280 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 AC005014.2-201ENST00000607795 599 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 AC019193.3-201ENST00000609144 554 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 AL669831.3-213ENST00000636676 183 ntBASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.48□□□□□ -2.17
ZNF540Q8NDQ6 MTND4P29-201ENST00000503122 1372 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 AC006026.1-201ENST00000444025 1803 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 MIR378A-201ENST00000362177 66 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.123-201ENST00000363338 102 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 SNORD1A-201ENST00000364968 72 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.387-201ENST00000383918 102 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.533-201ENST00000384596 114 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.535-201ENST00000384612 99 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 MIR521-1-201ENST00000384902 87 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 MIR487A-201ENST00000385009 80 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 RNY4P36-201ENST00000391116 96 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 MIR208B-201ENST00000401172 77 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 RN7SKP101-201ENST00000411376 320 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 AL358453.1-201ENST00000422522 250 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 CST2P1-201ENST00000425770 87 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 Z82188.1-201ENST00000436709 154 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms